Browse
Submit Data
Databases
API
Help

Dataset Information

0 Views

0 Connections

0 Citations

0 Reanalyses

0 Downloads

Omics score: 0

MRNA sequencing of mouse melanoma cells with micro-domain sAC expression

ABSTRACT: mRNA sequencing of mouse melanoma cells with micro-domain sAC expression

PROVIDER: PRJNA668618 | ENA |

REPOSITORIES: ENA

ACCESS DATA

Json Xml

Dataset's files

Source:

			Action	DRS
	SRR12807731_1.fastq.gz	Fastqsanger.gz
	SRR12807731_2.fastq.gz	Fastqsanger.gz
	SRR12807732_1.fastq.gz	Fastqsanger.gz
	SRR12807732_2.fastq.gz	Fastqsanger.gz
	SRR12807733_1.fastq.gz	Fastqsanger.gz

Items per page:

1 - 5 of 26

Similar Datasets

mRNA sequencing of mouse melanoma xenografts with micro-domain sAC expression

Project description:Transcriptome sequencing of mouse melanoma xenografts containing micro-domain localized sAC under control of doxycycline.

2021-10-11 | GSE159362 | GEO

mRNA sequencing of mouse melanoma cells with micro-domain sAC expression

Project description:Transcriptome sequencing of mouse melanoma cell lines containing micro-domain localized sAC under control of doxycycline.

2021-10-11 | GSE159363 | GEO

ATAC-seq of mouse melanoma cells with micro-domain sAC expression

Project description:Transcriptome sequencing of mouse melanoma cell lines containing micro-domain localized sAC under control of doxycycline.

2021-10-11 | GSE159364 | GEO

mRNA sequencing of mouse melanoma xenografts with micro-domain sAC expression

Project description:mRNA sequencing of mouse melanoma xenografts with micro-domain sAC expression

| PRJNA668617 | ENA

ATAC-seq of mouse melanoma cells with micro-domain sAC expression

Project description:ATAC-seq of mouse melanoma cells with micro-domain sAC expression

| PRJNA668619 | ENA

Spatial transcriptomics of fixed tissue micro-regions using Pick-Seq [melanoma]

Project description:Spatial transcriptomics and multiplexed imaging are complementary methods for studying tissue biology. Here we describe a simple method for transcriptional profiling of formalin fixed histology specimens based on mechanical isolation of tissue micro-regions containing 5-20 cells. Sequencing micro-regions from an archival melanoma specimen having multiple distinct histologies reveals significant differences in transcriptional programs associated with tumor invasion, proliferation, and immunoediting and parallel imaging confirms changes in immuno-phenotypes and cancer cell states.

2021-09-01 | GSE158562 | GEO

mRNA expression in vulvar melanoma

Project description:mRNA expression in vulvar melanoma

| PRJNA858658 | ENA

mRNA expression in vaginal melanoma

Project description:mRNA expression in vaginal melanoma

| PRJNA858650 | ENA

Expression data from Tnrc6a (GW182) mutant yolk sac

Project description:GW182 (Tnrc6a) is a key component of RISC (miRNA-Induced Silencing Complex) that plays a critical role in miRNA-mediated gene silencing. Here, we show that GW182 is expressed in the yolk sac endoderm, and that gene-trap disruption of GW182 leads to growth arrest of yolk sac endoderm, impaired hematopoiesis and embryonic lethality. To investigate roles of GW182 in the yolk sac endoderm, we assessed changes in mRNA expression in the yolk sac of E9.5 GW182gt/gt embryos using microarrays (Affymetrix). Yolk sac of wild type littermates and GW182gt/gt embryos at E9.5 was collected for total RNA isolation using Trizol (Invitrogen). RNAs were purified according to the manufacturer’s protocol before subjected to Mouse Gene 1.0 ST Whole Genome Array (Affymetrix) for mRNA expression profiling. Experiments were performed in triplicate. Differentially expressed mRNAs were identified using a two-sample t-test (P<0.05 considered significant).

2011-08-31 | E-GEOD-30244 | biostudies-arrayexpress

Expression data from Tnrc6a (GW182) mutant yolk sac

2011-09-01 | GSE30244 | GEO