Browse
Submit Data
Databases
API
Help

Dataset Information

0 Views

0 Connections

0 Citations

0 Reanalyses

0 Downloads

Omics score: 0

ABSTRACT: soil nematode in a large scale

PROVIDER: PRJNA669211 | ENA |

REPOSITORIES: ENA

ACCESS DATA

Json Xml

Dataset's files

Source:

			Action	DRS
	SRR12828600_1.fastq.gz	Fastqsanger.gz
	SRR12828600_2.fastq.gz	Fastqsanger.gz
	SRR12828601_1.fastq.gz	Fastqsanger.gz
	SRR12828601_2.fastq.gz	Fastqsanger.gz
	SRR12828602_1.fastq.gz	Fastqsanger.gz

Items per page:

1 - 5 of 308

Similar Datasets

Project description:Soil samples at large scale

| PRJNA1035420 | ENA

mRNA microarray analysis on young adult Caenorhabditis elegans exposed to MWCNT

Project description:In order to evaluate the identification of genes and pathways, the global gene expression profiles were assessed in response to multiwall carbon nanotube (MWCNT) on the soil nematode, Caenorhabditis elegans. We performed whole genome DNA microarray experiments with subsequent quantitative analysis conducted on selected genes.

2011-12-31 | GSE24847 | GEO

C. elegans genomic response to Konza Prairie Soil bacterial environment

Project description:Here we have compared adult wildtype (N2) C. elegans gene expression when grown on different bacterial environments/fod sources in an effort to model naturally occuring nematode-bacteria interactions at the Konza Prairie. We hypothesize that human-induced changes to natural environments, such as the addition of nitrogen fertalizer, have effects on the bacterial community in soils and this drives downstream changes in the structure on soil bacterial-feeding nematode community structure. Here we have used transcriptional profiling to identify candidate genes involved in the interaction of nematodes and bacteria in nature.

2009-05-02 | GSE15923 | GEO

mRNA microarray analysis on young adult Caenorhabditis elegans exposed to benzene, toluene, formaldehyde and a BTF mix

Project description:In order to evaluate the identification of genes and pathways, the global gene expression profiles were assessed in response to three chemicals (benzene (B), toluene (T), formaldehyde (F)) individually and as a BTF mix on the soil nematode, Caenorhabditis elegans. We performed whole genome DNA microarray experiments with subsequent quantitative analysis conducted on selected genes.

2011-12-31 | GSE23013 | GEO

Deep Sea Marine Fungus VLC Fractions

Project description:Deep seas marine fungus SST2-VLC fractions. Isolated from soil sediment from South Shetland Trench, Antarctica (-58.90865, -61.122976, ~5100 m). Large scale fermentation on rice medium followed by subsequent methanol extraction. Finally, vacuum liquid chromatography was completed using an increasing gradient from hexane-dichloromethane-methanol.

2019-07-11 | MSV000084073 | MassIVE

Comparative toxicogenomic effects of three IMX-101 constituents DNAN, NTO and NQ on C. elegans

Project description:We used the soil nematode Caenorhabditis elegans, a well-characterized genomics model organism, as the test organism and a species-specific, genome-wide 44K-oligo probe microarray for gene expression analysis. Our goal was to discern toxicological mechanisms for three insensitive munitions formulation IMX-101 constituents 2,4-dinitroanisole (DNAN), nitroguanidine (NQ) and nitrotriazolone (NTO) at the molecular level.

2017-06-01 | GSE92365 | GEO

Toxicogenomic effects of nano- and bulk TiO2 particles in the soil nematode Carnorhabditis elegans

Project description:The toxicity and toxicogenomics of selected anatase and rutile nanoparticles (NP) and bulk titanium dioxide (TiO2) particles were evaluated in the soil nematode Caenorhabditis elegans. Results indicated that bulk or nano-TiO2 particles were slightly toxic to soil nematode C. elegans, as measured by reproduction EC50 values ranging from 4 to 32 mg/L. Whole-genome microarray results indicated that the regulation of glutathione-S-transferase gst-3, cytochrome P450 cypp33-c11, stress resistance regulator scl-1, oxidoreductase wah-1, and embryonic development pod-2 genes were significantly affected by nano-sized and bulk TiO2 particles. More specifically, it was determined that anatase particles exerted a greater effect on metabolic pathways, whereas rutile particles had a greater effect on developmental processes. The up-regulation of the pod-2 gene corroborated the phenotypic effect observed in the reproduction test. Our results demonstrated that C. elegans is a good genomic model for nano-TiO2 toxicity assessment.

2014-07-17 | GSE59470 | GEO

E-PROT-57

Project description:The Mount Sinai cohort of large-scale proteomic data in Alzheimer's disease

2021-05-20 | E-PROT-57 | ExpressionAtlas

Microbial communities of vineyard BRO11-BRO12 soils (GeoChip)

Project description:In this work, we used a functional gene microarray approach (GeoChip) to assess the soil microbial community functional potential related to the different wine quality. In order to minimize the soil variability, this work was conducted at a “within-vineyard” scale, comparing two similar soils (BRO11 and BRO12) previously identified with respect to pedological and hydrological properties within a single vineyard in Central Tuscany and that yielded highly contrasting wine quality upon cultivation of the same Sangiovese cultivar

2020-03-04 | GSE146289 | GEO

Project description:Large-scale Identification of Conopeptides

| PRJNA422317 | ENA