Browse
Submit Data
Databases
API
Help

Dataset Information

0 Views

0 Connections

0 Citations

0 Reanalyses

0 Downloads

Omics score: 0

Mycobacterium orygis strain:MUHC/MB/EPTB/Orygis/51145

ABSTRACT: Mycobacterium orygis strain:MUHC/MB/EPTB/Orygis/51145 Genome sequencing

PROVIDER: PRJNA672657 | ENA |

REPOSITORIES: ENA

ACCESS DATA

Json Xml

Dataset's files

Source:

			Action	DRS
		Other
	SRR12966358_subreads.fastq.gz	Fastqsanger.gz
	SRR12916665_subreads.fastq.gz	Fastqsanger.gz
	SRR16643349_1.fastq.gz	Fastqsanger.gz
	SRR16643349_2.fastq.gz	Fastqsanger.gz

Items per page:

1 - 5 of 5

Similar Datasets

Mycobacterium orygis strain:NIAB_BDWBCSHFL_1

Project description:Mycobacterium orygis strain: NIAB_BDWBCSHFL_1 Genome sequencing

| PRJNA1037712 | ENA

Mycobacterium orygis

Project description:Mycobacterium orygis overview

| PRJNA193361 | ENA

Mycobacterium orygis 112400015

Project description:Mycobacterium orygis 112400015 Genome sequencing and assembly

| PRJNA193095 | ENA

Mycobacterium orygis strain:NIRTAH144

Project description:Whole genome sequence of Mycobacterium orygis isolated from a cattle in Chennai, India

| PRJNA545406 | ENA

Complete Genome Sequence of Mycobacterium orygis Strain 51145.

Project description:We report the complete 4,352,172-bp genome sequence of Mycobacterium orygis strain 51145 assembled into a single circular chromosome. Comparative genomic analyses with other lineages of the Mycobacterium tuberculosis complex can provide insights into the biology, evolution, and epidemiology of this important group of pathogenic mycobacteria.

| S-EPMC8407732 | biostudies-literature

Identification of microproteins in Mycobacterium smegmatis by proteogenomics

Project description:We employed a proteogenomics workflow to identify microproteins encoded by small Open Reading Frames (ORFs) in the genome of Mycobacterium smegmatis strain mc²155.

2022-04-21 | PXD025604 | JPOST Repository

Mycobacterium africanum and Mycobacterium orygis in Norway

Project description:Whole-genome sequencing of all M. africanum and M. orygis isolates identified in Norway 2010-2020.

| PRJEB43202 | ENA

Transcriptome sequencing data analysis of Bacillus subtilis NCIB 3610 wild-type strain, tmRNA mutant strain and MB revertant strain

Project description:In our study, we found that lack of tmRNA affects the biofilm formation in Bacillus subtilis, which has important research significance. Then, we obtained a revertant strain MB from tmRNA mutant strain. And MB strain could restore biofilm production capacity. Therefore, the transcriptomes of the three strains were sequenced. Based on the statistical analysis of gene expression (P < 0.05), there were 756 genes up regulated while 992 genes down regulated by at least two folds when comparing TM to WT. Secondly, there were 974 genes up regulated while 563 genes down regulated by at least two folds when comparing MB to TM. And there were 179 genes up regulated while 307 genes down regulated by at least two folds when comparing MB to WT.

2022-08-03 | GSE199151 | GEO

Mycobacterium smegmatis - Comparison of amtR deletion strain YL1 under nitrogen surplus and starvation

Project description:In this approach, total transcript of a Mycobacterium smegmatis amtR deletion strain was compared under nitrogen surplus and starvation. This is a control experiment to the comparison of wild type and amtR deletion strain, resulting nitrogen-related genes which are not AmtR-controlled. Two biological replicates were analyzed.

2011-07-01 | GSE30232 | GEO

Mycobacterium smegmatis - Comparison of glnR deletion strain MH1 under nitrogen surplus and starvation

Project description:In this approach, changes in total transcript of a glnR deletion strain of Mycobacterium smegmatis due to nitrogen starvation were monitored. This is a control experiment for the comparison of wild type and glnR deletion strain resulting in putative nitrogen-related genes which are not controlled by GlnR.

2011-07-01 | GSE30033 | GEO

OmicsDI is part of the ELIXIR infrastructure

OmicsDI is an Elixir interoperability service. Learn more ›

Tweets

OmicsDI Databases

PRIDE
PeptideAtlas
MassIVE
JPOST Repository
Physiome Model Repository

EGA
EVA
ENA
LINCS
PAXDB
Cell Collective

MetaboLights
Metabolomics Workbench
MetabolomeExpress
GNPS
BioModels
FAIRDOMHub

ArrayExpress
dbGaP
ExpressionAtlas
GEO
NODE

Information

Databases
Help
API
Contact us
Code on GitHub
Terms of use
Submit Data