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Single-cell RNA-seq in mouse kidneys after IRI

ABSTRACT: Single-cell RNA-seq in mouse kidneys after IRI

PROVIDER: PRJNA675866 | ENA |

REPOSITORIES: ENA

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			Action	DRS
	SRR13020293_1.fastq.gz	Fastqsanger.gz
	SRR13020293_2.fastq.gz	Fastqsanger.gz
	SRR13020294_1.fastq.gz	Fastqsanger.gz
	SRR13020294_2.fastq.gz	Fastqsanger.gz
	SRR13020295_1.fastq.gz	Fastqsanger.gz

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Single-cell RNA-seq in mouse kidneys after IRI

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Project description:12 – 14-week-old male C57Bl6N mice were divided into 3 treatment groups (n=5). First, non-preconditioned animals received ad libitum access to food under a daily 12 hour light and 12 hour dark rhythm with similar specific pathogen free (SPF) conditions in group-cages with up to 5 mice at the same time. Calorically restricted mice obtained 66% of the usual daily intake (3 g per day per mouse) 28 days before surgery as previously described (PMID: 30522767). For the hypoxic preconditioning mice were kept in a hypoxia chamber with a reduction of oxygen to 8.3% for 2 h, 4 h and 8 h on three following days prior to surgery based on the description of Bernaudin et al. (PMID: 11919510). On the day of Ischemia-Reperfusion Injury (IRI) all mice were anesthetized by ketamin (Zoetis (Berlin, Germany))/xylazine (Bayer (Leverkusen, Germany)) and afterwards all mice received a midline abdominal incision as previously described (PMID: 27557097). After ligation of the right kidney vessels right nephrectomy was performed and the kidneys were cut into halves. One half was frozen in liquid nitrogen for proteomic analyses. Then, the left renal vessels were clamped for 40 minutes followed by a subsequent removal of the clamp for reperfusion. The abdominal incision was closed. Subsequently, the mice were placed into single cages. 4 h after reperfusion and following another anesthesia the left kidneys were taken out. Again, the kidneys were cut into two halves and one of it was preserved in liquid nitrogen for proteomic analyses.

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