Browse
Submit Data
Databases
API
Help

Dataset Information

0 Views

0 Connections

0 Citations

0 Reanalyses

0 Downloads

Omics score: 0

ABSTRACT: Integrated Full-length Transcriptome and RNA-Seq to Identify Immune System Genes from the Skin of Sperm Whale (Physeter macrocephalus)

PROVIDER: PRJNA676103 | ENA |

REPOSITORIES: ENA

ACCESS DATA

Json Xml

Dataset's files

Source:

			Action	DRS
	SRR13038369_subreads.fastq.gz	Fastqsanger.gz
	SRR13024481_1.fastq.gz	Fastqsanger.gz
	SRR13024481_2.fastq.gz	Fastqsanger.gz

Items per page:

1 - 3 of 3

Similar Datasets

Physeter catodon strain:female

Project description:Physeter macrocephalus Genome Sequencing

| PRJNA89089 | ENA

Physeter catodon

Project description:Physeter macrocephalus Transcriptome or Gene expression

| PRJNA177694 | ENA

Physeter catodon

Project description:sperm whale

| PRJNA89335 | ENA

Project description:full‐length cDNA sequencing integrated Helicoverpa assulta

| PRJNA589714 | ENA

Project description:full‐length cDNA sequencing integrated Helicoverpa assulta

| PRJNA587871 | ENA

Genome Methylation in Wild Beluga Whales

Project description:An Infinium microarray platform (GPL28271, HorvathMammalMethylChip40) was used to generate DNA methylation data from skin samples of beluga whales, Maui's dolphin, and humpback whale. Tissue: Skin

2022-06-16 | GSE164465 | GEO

Drosophila melanogaster

Project description:Project to identify and characterize full-length cDNAs

| PRJNA12757 | ENA

Project description:Full-length transcriptome sequencing integrated with RNA-Seq reads identify pigment genes in goldfish (Carassius auratus)

| PRJNA580146 | ENA

Project description:Mediterranean sperm whale ddRAD project

| PRJNA936197 | ENA

Comparative genomic analysis revealed twenty-six candidate genes involved in the air-breathing function of the broadhead catfish Clarias macrocephalus

Project description:Walking catfish (Clarias macrocephalus) and channel catfish (Ictalurus punctatus) are freshwater fish species of the Siluriformes order. C. macrocephalus has both gills and modified gill structures serving as an air breathing organ (ABO) which allows them aerial breathing (AB), while I. punctatus does not possess an air-breathing organ (ABO), and thus cannot breathe in air. These two species provide an excellent model for studying the molecular basis of accessory air-breathing organ development in teleost fish. In this study, seven development stages in C. macrocephalus were selected for RNA-seq analysis to compare with channel catfish as the time when air breathing organ developed and became functional. Through comparative genetic contents analysis, 1,458 genes were identified to be present in C. macrocephalus, but absent from I. punctatus. Gene expression analysis and protein-protein intersection (PPI) analysis were performed, 26 genes were selected in C. macrocephalus, including mb, ngb, hbae genes, which are mainly associated with oxygen carrier activity, oxygen binding and heme binding activities. Our work provides a large data resource for exploring the genomic basis of air breathing function in C. macrocephalus and offers an insight into the adaption of aquatic organisms to hypoxia and high ammonia environment.

2020-12-09 | GSE151993 | GEO

OmicsDI is part of the ELIXIR infrastructure

OmicsDI is an Elixir interoperability service. Learn more ›

Tweets

OmicsDI Databases

PRIDE
PeptideAtlas
MassIVE
JPOST Repository
Physiome Model Repository

EGA
EVA
ENA
LINCS
PAXDB
Cell Collective

MetaboLights
Metabolomics Workbench
MetabolomeExpress
GNPS
BioModels
FAIRDOMHub

ArrayExpress
dbGaP
ExpressionAtlas
GEO
NODE

Information

Databases
Help
API
Contact us
Code on GitHub
Terms of use
Submit Data