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Profile analysis of circRNAs in osteoclasts infected by intracellular Staphylococcus aureus

ABSTRACT: Profile analysis of circRNAs in osteoclasts infected by intracellular Staphylococcus aureus

PROVIDER: PRJNA678967 | ENA |

REPOSITORIES: ENA

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			Action	DRS
	SRR13073973_1.fastq.gz	Fastqsanger.gz
	SRR13073973_2.fastq.gz	Fastqsanger.gz
	SRR13073974_1.fastq.gz	Fastqsanger.gz
	SRR13073974_2.fastq.gz	Fastqsanger.gz
	SRR13073975_1.fastq.gz	Fastqsanger.gz

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Profile analysis of circRNAs in human THP-1 derived macrophages infected with intracellular Staphylococcus aureus

Project description:Background: Intracellular Staphylococcus aureus (S. aureus) infection is generally persistent, recurrent and difficult to treat due to the poor availability of antibiotics within macrophages cells and the lack of ideal diagnostic markers. Circular RNA (circRNA), with covalently closed circular structures, exists in the serum stably and is not easily degraded by nucleases. CircRNAs play important roles in the eukaryotic regulation of genes expression and served as biomarkers in variety disease including infections. However, the function of host circRNAs in intracellular S. aureus infection remains largely unclear. Methods: In this study, an intracellular survival THP-1 derived macrophages model of S. aureus infection was established. Then, the circRNA expression profile was investigated by RNA sequencing technology in both S. aureus -infected THP-1 cells and mock control cells. The differentially expressed (DE) circRNAs with a fold-change ≥2.0 (p<0.05) are analyzed using functional pathway clustering prediction. RT-qPCR was performed to verify the top 9 DE circRNAs. Results: A total of 5,299 circRNAs were detected during the intracellular S. aureus infection. 61 DE circRNAs with a fold-change ≥1.5 (p<0.05) after S. aureus infection were identified. 22 circRNAs were up-regulated while 39 circRNAs were down-regulated. Functional annotation analysis demonstrated that Lysine degradation, RNA degradation and Neurotrophin signaling pathway are most important in intracellular S. aureus infection. Conclusion: Our study provides the first profile analysis of circRNAs involved in intracellular S. aureus infection, which may contribute to the understanding of its host evasion mechanisms.

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