Browse
Submit Data
Databases
API
Help

Dataset Information

0 Views

0 Connections

0 Citations

0 Reanalyses

0 Downloads

Omics score: 0

ABSTRACT: Direct genome sequencing of Ostreid herpesvirus 1 from infected tissues

PROVIDER: PRJNA679800 | ENA |

REPOSITORIES: ENA

ACCESS DATA

Json Xml

Dataset's files

Source:

			Action	DRS
	SRR13092000_1.fastq.gz	Fastqsanger.gz
	SRR13092000_2.fastq.gz	Fastqsanger.gz

Items per page:

1 - 2 of 2

Similar Datasets

oyster-OsHV-1 RNA-seq

Project description:Ostreid Herpesvirus type 1 (OsHV-1) has become a serious infective agent of the Pacific oyster livestock worldwide. In particular, the OsHV-1 muVar subtype has been associated to severe mortality episodes concerning Crassostrea gigas in France and other regions of the world such as Australia and New Zealand. Factors triggering productive infections and virus interactions with susceptible and resistant bivalve hosts are not completely understood though some studies have been undertaken to explore the genes expressed in oysters after infection. We took advantage of an highly infected oyster sample to perform an in-vivo dual RNA-seq analysis. An extremely high sequencing coverage allowed us to explore in detail the Herpesvirus genome and transcriptome, and to identify viral-activated molecular pathways in Crassostrea gigas, thus expanding the current knowledge on the host-virus interactions.

2014-12-31 | E-MTAB-2552 | biostudies-arrayexpress

Project description:Direct genome sequencing of Haliotid herpesvirus 1 from infected tissues

| PRJNA679801 | ENA

Project description:Ostreid herpesvirus 1 genome sequencing

| PRJNA448032 | ENA

2023_WGS_oshv1_7_kits

Project description:Evaluation of long-read sequencing for Ostreid herpesvirus type 1 genome characterization from host infected tissues, 2024

| PRJEB82928 | ENA

Ostreid herpesvirus 1

Project description:Ostreid herpesvirus 1 Genome sequencing and assembly

| PRJNA398466 | ENA

Project description:PacBio transcriptomic sequencing of Scapharca broughtonii infected with Ostreid herpesvirus 1

| PRJNA628527 | ENA

Project description:Illumina sequencing of Ostreid herpesvirus 1 infected blood cockle (Anadara kagoshimensis)

| PRJNA1132668 | ENA

HIF1α enrichment on KSHV genome in normoxia and hypoxia

Project description:Chromatin Immuno-precipitaion sequencing was performed using HIF1 alpha antibodies to investigate its enrichment on Kaposi's sarcoma associated herpesvirus (KSHV) genome in BC3 cells and purified KSHV infected PBMCs under normoxic or hypoxic conditions

2020-11-01 | GSE149401 | GEO

Ostreid herpesvirus 1 strain:F15-Thau_INF-2016

Project description:Ostreid herpesvirus 1 strain:F15-Thau_INF-2016 Genome sequencing and assembly

| PRJNA823871 | ENA

Project description:Transcriptomic sequencing of Scapharca broughtonii infecting with Ostreid herpesvirus 1

| PRJNA628528 | ENA