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Single cell RNA-seq characterizes neural cell population in mouse dorsal root ganglion tissue

ABSTRACT: Single cell RNA-seq characterizes neural cell population in mouse dorsal root ganglion tissue

PROVIDER: PRJNA685422 | ENA |

REPOSITORIES: ENA

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			Action	DRS
	SRR13256000_1.fastq.gz	Fastqsanger.gz
	SRR13256000_2.fastq.gz	Fastqsanger.gz
	SRR13256100_1.fastq.gz	Fastqsanger.gz
	SRR13256100_2.fastq.gz	Fastqsanger.gz
	SRR13256001_1.fastq.gz	Fastqsanger.gz

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Single cell RNA-seq characterizes neural cell population in mouse dorsal root ganglion tissue

Project description:We characterized the cell population in mouse dorsal root ganglion using single cell RNA-seq experiment. The data was generated to test the ability of deconvolution method AdRoit. Neural tissues typically have many closely related neuronal cell types and subtypes. The complex population composition forms a challenging testing ground for evaluating and benchmarking the accuracy and robustness of deconvolution methods.

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Project description:Aim: Dorsal root ganglion neuron-derived immortal cell lines including ND7/23 and F-11 cells have been used extensively as in vitro model systems of native peripheral sensory neurons. However, while it is clear that some sensory neuron-specific receptors and ion channels are present in these cell lines, a systematic comparison of the molecular targets expressed by these cell lines with intact peripheral neurons is lacking. Methods: we examined the expression of RNA transcripts in the human neuroblastoma-derived cell line, SH-SY5Y, and two dorsal root ganglion hybridoma cell lines, F-11 and ND7/23, using Illumina next-generation sequencing. Results: The expression profile of these three cell lines did not resemble any specific dorsal root ganglion neuron subclass. The cell lines lacked many markers for nociceptive sensory neurons, such as the transient receptor potential V1 gene, but expressed markers for both myelinated and unmyelinated neurons. Conclusion: This paper provides insights into the receptor repertoire expressed in common dorsal root ganglion neuron-derived cell lines, and illustrates the limits and potentials of these cell lines as tools for neuropharmacological exploration.

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