Browse
Submit Data
Databases
API
Help

Dataset Information

0 Views

0 Connections

0 Citations

0 Reanalyses

0 Downloads

Omics score: 0

ABSTRACT: RNA-Seq 11 Costa Rican bats NextSeq

PROVIDER: PRJNA685634 | ENA |

REPOSITORIES: ENA

ACCESS DATA

Json Xml

Dataset's files

Source:

			Action	DRS
	SRR13258651_1.fastq.gz	Fastqsanger.gz
	SRR13258651_2.fastq.gz	Fastqsanger.gz
	SRR13258652_1.fastq.gz	Fastqsanger.gz
	SRR13258652_2.fastq.gz	Fastqsanger.gz
	SRR13258653_1.fastq.gz	Fastqsanger.gz

Items per page:

1 - 5 of 22

Similar Datasets

Project description:Puerto Rican Bats Microbiome

| PRJNA602518 | ENA

Project description:Costa Rican amphibian microbiota

| PRJNA470570 | ENA

Clostridioides difficile

Project description:Clostridium difficile- Costa Rican hospitals

| PRJNA264745 | ENA

Project description:11 RNA-seq datasets from 4 nectar bats

| PRJNA742389 | ENA

Project description:Costa Rican Vanilla species orchid mycorrhizal fungi

| PRJNA772268 | ENA

Identification of novel genes and proteoforms in Angiostrongylus costaricensis through a proteogenomic approach

Project description:Data from multiple high throughput technologies such as RNA sequencing (RNA-Seq) and protein mass spectrometry (MS/MS) are often used to assist in predicting eukaryote genome features such as genes, splice variants, and single nucleotide variants (SNVs). The genomes of parasitic nematodes causing neglected tropical diseases are often poorly annotated. Angiostrongylus costaricensis, a nematode that causes an intestinal inflammatory disease known as abdominal angiostrongyliasis (AA), is one example. Currently, no drugs or treatments are available for AA, a public health problem in Latin America, especially in Costa Rica and Brazil. The available genome of A. costaricensis, specific to the Costa Rica strain, is a draft version not supported by transcript- or protein-level evidence. This study used RNA-Seq and MS/MS data to perform an in-depth annotation of the A. costaricensis genome. Our prediction supplemented the reference annotation with a) novel coding and non-coding genes; b) pieces of evidence of alternative splicing generating new proteoforms; c) a list of SNVs specific to the Brazilian strain (Crissiumal). To the best of our knowledge, this is the first time that a multi-omics approach has been used to improve the genome annotation of a parasitic nematode. We hope this supplemented genome annotation can assist the future development of drugs to treat AA caused by either Brazil strain (Crissiumal) or Costa Rica strain.

2023-03-11 | PXD034605 | Pride

mRNA-seq data from embryonic autopods of the common bent-wing bat (Miniopterus schreibersii)

Project description:The only freely flying mammals, bats, develop a pair of dramatically elongated hands and broad wing membranes. It is hypothesized that alterations of many gene expressions result in the bat wing formation. However, it remains to be proved. Here, by mRNA-seq, we found that hundreds of genes are significantly high expressed in the elongating forelimb digits. mRNA-seq data of 14 autopod samples from embryonic bats (Miniopterus schreibersii) were obtained by Illumina HiSeq 2000.

2014-04-14 | E-GEOD-50699 | biostudies-arrayexpress

Single-cell dissection of aggression in honeybee colonies

Project description:RNA-Sequencing performed on 177 honey bee whole-brains, divided into "soldier" and "forager" groups from Puerto Rican honey bee colonies.

2023-05-09 | GSE146085 | GEO

Clinical and Genetic Analysis of Costa Rican Patients with Parkinson’s Disease

Project description:Clinical and Genetic Analysis of Costa Rican Patients with Parkinson’s Disease

| PRJNA746012 | ENA

Clinical and Genetic Analysis of Costa Rican Patients with Parkinson’s Disease

Project description:Clinical and Genetic Analysis of Costa Rican Patients with Parkinson’s Disease

| PRJNA746011 | ENA