Browse
Submit Data
Databases
API
Help

Dataset Information

0 Views

0 Connections

0 Citations

0 Reanalyses

0 Downloads

Omics score: 0

Paracoccus stylophorae strain:LMG 25392

ABSTRACT: Paracoccus stylophorae strain:LMG 25392 Genome sequencing and assembly

PROVIDER: PRJNA689381 | ENA |

REPOSITORIES: ENA

ACCESS DATA

Json Xml

Dataset's files

Source:

			Action	DRS
		Other
	SRR23190562_1.fastq.gz	Fastqsanger.gz
	SRR23190562_2.fastq.gz	Fastqsanger.gz
	SRR23190563_1.fastq.gz	Fastqsanger.gz

Items per page:

1 - 4 of 4

Similar Datasets

Paracoccus rhizosphaerae strain:LMG 21293

Project description:Paracoccus rhizosphaerae strain:LMG 21293 Genome sequencing and assembly

| PRJNA885567 | ENA

Paracoccus haeundaensis strain:LMG P-21903

Project description:Paracoccus haeundaensis strain:LMG P-21903 Genome sequencing and assembly

| PRJNA689408 | ENA

Transcriptome profiling reveals the EanI/R quorum sensing regulon in Pantoea ananatis LMG 2665T

Project description:Background: Pantoea ananatis LMG 2665T synthesizes and utilizes acyl homoserine lactones (AHLs) for signaling. In this strain, short chain AHLs (C4 to C8) are produced by the EanI/R quorum sensing (QS) system that is involved in pathogenicity and biofilm formation. The complete set of genes regulated by the EanI/R system in P. ananatis LMG 2665T is still not fully known. In the present study, RNA-seq was used to analyze the transcriptome profiles controlled by the EanI/R system in this strain by comparing the wild type strain and its QS mutant 2665T ean∆I/R during lag and log stages. The RNA seq data was validated by RT qPCR. Results: The results showed that the EanI/R regulon in P. ananatis LMG 2665T comprised 144 genes, constituting 3.3% of the whole transcriptome under the experimental conditions in this study. The majority of genes regulated by the EanI/R system included genes for flagella assembly, bacterial chemotaxis, pyruvate metabolism, two component system, metabolic pathways, microbial metabolism and biosynthesis of secondary metabolites. Conclusions: This is the first study to identify the EanI/R QS regulon in P. ananatis LMG 2665T. Functional analysis of genes regulated the EanI/R system in LMG 2665T could help unveil genes that play a vital role in pathogenesis and survival strategies of this pathogen.

2018-10-31 | GSE87207 | GEO

Paracoccus tegillarcae strain:BM15

Project description:Paracoccus tegillarcae strain:BM15 Genome sequencing and assembly

| PRJNA417897 | ENA

Paracoccus contaminans strain:WPAn02T

Project description:Paracoccus contaminans strain:WPAn02T Genome sequencing and assembly

| PRJNA369557 | ENA

Paracoccus pantotrophus strain:NJUST38

Project description:Paracoccus pantotrophus strain:NJUST38 Genome sequencing and assembly

| PRJNA498755 | ENA

Paracoccus kondratievae strain:BJQ0001

Project description:Paracoccus kondratievae strain:BJQ0001 Genome sequencing and assembly

| PRJNA574853 | ENA

Paracoccus caeni strain:MJ17

Project description:Paracoccus caeni strain:MJ17 Genome sequencing and assembly

| PRJNA690518 | ENA

Paracoccus yeei strain:CP137

Project description:Paracoccus yeei strain:CP137 Genome sequencing and assembly

| PRJNA689398 | ENA

Paracoccus fistulariae strain:K22803

Project description:Paracoccus fistulariae strain:K22803 Genome sequencing and assembly

| PRJNA916828 | ENA

OmicsDI is part of the ELIXIR infrastructure

OmicsDI is an Elixir interoperability service. Learn more ›

Tweets

OmicsDI Databases

PRIDE
PeptideAtlas
MassIVE
JPOST Repository
Physiome Model Repository

EGA
EVA
ENA
LINCS
PAXDB
Cell Collective

MetaboLights
Metabolomics Workbench
MetabolomeExpress
GNPS
BioModels
FAIRDOMHub

ArrayExpress
dbGaP
ExpressionAtlas
GEO
NODE

Information

Databases
Help
API
Contact us
Code on GitHub
Terms of use
Submit Data