Browse
Submit Data
Databases
API
Help

Dataset Information

0 Views

0 Connections

0 Citations

0 Reanalyses

0 Downloads

Omics score: 0

Paracoccus rhizosphaerae strain:LMG 21293

ABSTRACT: Paracoccus rhizosphaerae strain:LMG 21293 Genome sequencing and assembly

PROVIDER: PRJNA885567 | ENA |

REPOSITORIES: ENA

ACCESS DATA

Json Xml

Dataset's files

Source:

			Action	DRS
		Other

Items per page:

1 - 1 of 1

Similar Datasets

Paracoccus stylophorae strain:LMG 25392

Project description:Paracoccus stylophorae strain:LMG 25392 Genome sequencing and assembly

| PRJNA689381 | ENA

Paraburkholderia rhizosphaerae strain:LMG 29544 | isolate:LMG 29544

Project description:Burkholderia rhizosphaerae LMG 29544 genome sequencing

| PRJNA364285 | ENA

Paracoccus haeundaensis strain:LMG P-21903

Project description:Paracoccus haeundaensis strain:LMG P-21903 Genome sequencing and assembly

| PRJNA689408 | ENA

Transcriptome profiling reveals the EanI/R quorum sensing regulon in Pantoea ananatis LMG 2665T

Project description:Background: Pantoea ananatis LMG 2665T synthesizes and utilizes acyl homoserine lactones (AHLs) for signaling. In this strain, short chain AHLs (C4 to C8) are produced by the EanI/R quorum sensing (QS) system that is involved in pathogenicity and biofilm formation. The complete set of genes regulated by the EanI/R system in P. ananatis LMG 2665T is still not fully known. In the present study, RNA-seq was used to analyze the transcriptome profiles controlled by the EanI/R system in this strain by comparing the wild type strain and its QS mutant 2665T ean∆I/R during lag and log stages. The RNA seq data was validated by RT qPCR. Results: The results showed that the EanI/R regulon in P. ananatis LMG 2665T comprised 144 genes, constituting 3.3% of the whole transcriptome under the experimental conditions in this study. The majority of genes regulated by the EanI/R system included genes for flagella assembly, bacterial chemotaxis, pyruvate metabolism, two component system, metabolic pathways, microbial metabolism and biosynthesis of secondary metabolites. Conclusions: This is the first study to identify the EanI/R QS regulon in P. ananatis LMG 2665T. Functional analysis of genes regulated the EanI/R system in LMG 2665T could help unveil genes that play a vital role in pathogenesis and survival strategies of this pathogen.

2018-10-31 | GSE87207 | GEO

Xaviernesmea rhizosphaerae strain:RD15

Project description:Xaviernesmea rhizosphaerae strain:RD15 Genome sequencing and assembly

| PRJNA357196 | ENA

Hoyosella rhizosphaerae strain:J12GA03

Project description:Hoyosella rhizosphaerae strain:J12GA03 Genome sequencing and assembly

| PRJNA664485 | ENA

Idiomarina rhizosphaerae strain:M1R2S28

Project description:Idiomarina rhizosphaerae strain:M1R2S28 Genome sequencing and assembly

| PRJNA853903 | ENA

Aquibacillus rhizosphaerae strain:LR5S19

Project description:Aquibacillus rhizosphaerae strain:LR5S19 Genome sequencing and assembly

| PRJNA980386 | ENA

Flavimobilis rhizosphaerae strain:GY10621

Project description:Flavimobilis rhizosphaerae strain:GY10621 Genome sequencing and assembly

| PRJNA665780 | ENA

Saccharopolyspora rhizosphaerae strain:H219

Project description:Saccharopolyspora rhizosphaerae strain:H219 Genome sequencing and assembly

| PRJNA507588 | ENA

OmicsDI is part of the ELIXIR infrastructure

OmicsDI is an Elixir interoperability service. Learn more ›

Tweets

OmicsDI Databases

PRIDE
PeptideAtlas
MassIVE
JPOST Repository
Physiome Model Repository

EGA
EVA
ENA
LINCS
PAXDB
Cell Collective

MetaboLights
Metabolomics Workbench
MetabolomeExpress
GNPS
BioModels
FAIRDOMHub

ArrayExpress
dbGaP
ExpressionAtlas
GEO
NODE

Information

Databases
Help
API
Contact us
Code on GitHub
Terms of use
Submit Data