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Transcriptome profile of Escherichia coli K12 MG1655 under Rtc-inducing conditions

ABSTRACT: Transcriptome profile of Escherichia coli K12 MG1655 under Rtc-inducing conditions

PROVIDER: PRJNA693291 | ENA |

REPOSITORIES: ENA

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Dataset's files

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			Action	DRS
	SRR13484742.fastq.gz	Fastqsanger.gz
	SRR13484743.fastq.gz	Fastqsanger.gz
	SRR13484744.fastq.gz	Fastqsanger.gz
	SRR13484745.fastq.gz	Fastqsanger.gz
	SRR13484746.fastq.gz	Fastqsanger.gz

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Transcriptome profile of Escherichia coli K12 MG1655 cells lacking selected genes

Project description:The aim of the study was to compare the transcriptome of E. coli K12 MG1655 cells lacking genes known to induce the Rtc RNA repair system, such as gor, mazF and srmB, to wild-type cells. In all cases, less than 1% of the genes were found to be differentially expressed.

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Transcriptome profile of Escherichia coli K12 MG1655 Hpx- cells

Project description:The aim of the study was to compare the transcriptome of E. coli K12 MG1655 cells lacking hydroperoxidase (Hpx-) and therefore unable to detoxify hydrogen peroxide, to wild-type cells; both when the Rtc RNA repair system is active and when it is inhibited; at 8 and 24 hpi. A very large number of genes (up to 1/3) were found to be differentially expressed in Hpx- as compared to wild-type. Inhibition of the Rtc system had dramatic effects on Hpx- but not on wild-type.

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Transcriptome profile of Escherichia coli K12 MG1655 under Rtc-inducing conditions

Project description:This SuperSeries is composed of the SubSeries listed below.

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Transcriptome analysis of E.coli MG1655 under multiple growth conditions

Project description:Investigation of comprehensive information about the expression level of RNA transcripts across the entire E.coli genome in mulitple growth conditions, including log-phase; stationary phase, heat shock and nitrogen-limiting condition. A fourteen chip study using total RNA recovered from four separate culture conditions of E.coli K12 MG1655. E.coli strains were harvested at mid-exponential phase with exception of stationary phase experiments. The high-density oligonucleotide tiling arrays used were consisted of 371,034 oligonucleotide probes spaced 25 bp apart (25-bp overlap between two probes) across the E. coli genome (NimbleGen). Experiments were conducted as three or more biological replicates (different cultures)

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Escherichia coli strain:K12 MG1655

Project description:Escherichia coli strain:K12 MG1655 Genome sequencing

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Transcriptome profile of Escherichia coli K12 MG1655 Hpx- cells

Project description:Transcriptome profile of Escherichia coli K12 MG1655 Hpx- cells