Browse
Submit Data
Databases
API
Help

Dataset Information

0 Views

0 Connections

0 Citations

0 Reanalyses

0 Downloads

Omics score: 0

Plastic metagenome

ABSTRACT: Archaeal, bacterial and fungal raw sequence reads associated with degradation (90 days in laboratory conditions) of bio-based and biodegradable plastic, polybutylene succinate-co-adipate (PBSA)

PROVIDER: PRJNA702448 | ENA |

REPOSITORIES: ENA

ACCESS DATA

Json Xml

Dataset's files

Source:

			Action	DRS
	SRR15247053_1.fastq.gz	Fastqsanger.gz
	SRR15247053_2.fastq.gz	Fastqsanger.gz
	SRR15247054_1.fastq.gz	Fastqsanger.gz
	SRR15247054_2.fastq.gz	Fastqsanger.gz
	SRR15247055_1.fastq.gz	Fastqsanger.gz

Items per page:

1 - 5 of 62

Similar Datasets

plastic metagenome

Project description:Biodegradable plastic metagenome Raw sequence reads

| PRJNA595487 | ENA

Plastics investigated can be mineralized by bacteria naturally occurring within the marine environment

Project description:Biodegradable plastics are one possible solution for reducing plastic waste, yet the mechanisms and organisms involved in their degradation in the aquatic environment remain understudied. In this study, we have enriched a microbial community from North Sea water and sediment, capable of growing on the polyester poly(butylene succinate). This culture was grown on two other biodegradable polyesters, polycaprolactone and ecovio® FT (a PBAT-based blended biodegradable plastic), and the differences between community structure and activity on these three polymers were determined by metagenomics and metaproteomics. We have seen that the plastic supplied drives the community structure and activity. Setups growing on ecovio® FT were more diverse, yet showed the lowest degradation, while poly(butylene succinate) and polycaprolactone resulted in a less diverse community but much higher degradation efficiencies. The dominating species were Alcanivorax sp., Thalassobius sp., or Pseudomonas sp., depending on the polymer supplied. Furthermore, we have observed that Gammaproteobacteria were more abundant and active within the biofilm and Alphaproteobacteria within the free-living fraction of the enrichments. Two of the three PETase-like enzymes isolated were expressed as tandems (Ple -tan1 &Ple – tan2) and all three were produced by Pseudomonas sp. Of those, Ple-tan1 was most active on all three substrates and also the most thermostable. Overall, we could show that all three plastics investigated can be mineralized by bacteria naturally occurring within the marine environment and characterize some of the enzymes involved in the degradation process.

2023-11-22 | PXD038098 | Pride

A ITS amplicon project for the plastisphere of biodegradable plastic mulches

Project description:A ITS amplicon project for the plastisphere of biodegradable plastic mulches Metagenome

| PRJNA845930 | ENA

Plastic degrdation in Rhodococcus

Project description:The study aimed to explore the potential of bacterial biodegradation as a solution to the global problem of plastic pollution, specifically targeting polyethylene (PE), one of the most common types of plastic. The goals of the study were to isolate a bacterial strain capable of breaking down PE, identify the key enzymes responsible for the degradation process, and understand the metabolic pathways involved. By investigating these aspects, researchers sought to gain critical insights that could be used to optimize plastic degradation conditions and inform the development of artificial microbial communities for effective bioremediation strategies. This research has significant relevance, as it addresses the pressing need for innovative and sustainable approaches to tackle the ever-growing issue of plastic waste and its impact on the environment.

2024-01-02 | PXD041981 | Pride

plastic metagenome

Project description:Plastic microbiome - raw sequence reads

| PRJNA484726 | ENA

plastic metagenome

Project description:plastic metagenome Raw sequence reads

| PRJNA691731 | ENA

WINOGRADSKY PLASTIC TOP

Project description:WINOGRADSKY PLASTIC UPPER LEVEL

| PRJEB32055 | ENA

WINOGRADSKY PLASTIC BOTTOM

Project description:WINOGRADSKY PLASTIC LOWER LEVEL