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Gene expression profiles of Washington navel oranges (Citrus sinensis (L) Osbeck) graft innoculated with Candidatus Liberibacter asiaticus, Spiroplasma citri, or two citrus tristeza isolates

ABSTRACT: Gene expression profiles of Washington navel oranges (Citrus sinensis (L) Osbeck) graft innoculated with Candidatus Liberibacter asiaticus, Spiroplasma citri, or two citrus tristeza isolates

PROVIDER: PRJNA703546 | ENA |

REPOSITORIES: ENA

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			Action	DRS
	SRR13757900_1.fastq.gz	Fastqsanger.gz
	SRR13757900_2.fastq.gz	Fastqsanger.gz
	SRR13757901_1.fastq.gz	Fastqsanger.gz
	SRR13757901_2.fastq.gz	Fastqsanger.gz
	SRR13757902_1.fastq.gz	Fastqsanger.gz

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Gene expression profiles of Washington navel oranges (Citrus sinensis (L) Osbeck) graft innoculated with Candidatus Liberibacter asiaticus, Spiroplasma citri, or two citrus tristeza isolates

Project description:Pathogens can trigger a broad array of changes in gene expression in plants. In this study we report the changes in gene expression patterns that occurred when greenhouse grown Washington Navel oranges (C. sinensis) was graft innoculated with citrus pathogens. Candidatus Liberibacter asiaticus, Spiroplasma citri, and two isolates of citrus tristeza virus were studied.

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Project description:Citrus greening or huanglongbing (HLB) is a devastating disease of citrus. HLB is associated with the phloem-limited fastidious prokaryotic alpha-proteobacterium Candidatus Liberibacter spp. In this report, we used sweet orange (Citrus sinensis) leaf tissue infected with 'Ca. Liberibacter asiaticus' and compared this with healthy controls. Investigation of the host response was examined with citrus microarray hybridization based on 30,171 sets expressed sequence tag sequences from several citrus species and hybrids. The microarray analysis indicated that HLB infection significantly affected expression of 624 genes whose encoded proteins were categorized according to function. The categories included genes associated with sugar metabolism, plant defense, phytohormone, and cell wall metabolism, as well as 14 other gene categories. Young, healthy Valencia sweet orange (C. sinensis) plants were graft inoculated with budwood from Ca. L. asiaticus-infected citrus plants. Prior to the innocualtion, the plants were confirmed to be Ca. L. asiaticus-free in ordinary and quantitative PCR tests. The presence of the bacteria in the inoculated plants was confirmed in both conventional and quantitative PCR with specific primers to Ca. L. asiaticus. The stem and root samples used for RNA extraction and hybridization on Affymetrix microarrays were obtained from three symptomatic and three healthy control trees of similar size, approximately 1 year after inoculation.

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Citrus sinensis cultivar:Parent Washington Navel

Project description:Citrus sinensis cultivar:Parent Washington Navel Transcriptome or Gene expression

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Project description:Citrus sinensis cultivar:Parent Washington navel orange Assembly

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Citrus sinensis cultivar:Parent Washington Navel orange

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