Browse
Submit Data
Databases
API
Help

Dataset Information

0 Views

0 Connections

0 Citations

0 Reanalyses

0 Downloads

Omics score: 0

ABSTRACT: Metagenome in built environments from Xiamen

PROVIDER: PRJNA707496 | ENA |

REPOSITORIES: ENA

ACCESS DATA

Json Xml

Dataset's files

Source:

			Action	DRS
	SRR13889100.fastq.gz	Fastqsanger.gz
	SRR13889200.fastq.gz	Fastqsanger.gz
	SRR13889300.fastq.gz	Fastqsanger.gz
	SRR13889400.fastq.gz	Fastqsanger.gz
	SRR13889500.fastq.gz	Fastqsanger.gz

Items per page:

1 - 5 of 547

Similar Datasets

Xiamen WWTP

Project description:Xiamen WWTP Metagenome

| PRJNA545043 | ENA

Man-made microbial resistances in built environments

Project description:Comparative metagenomics of controlled and uncontrolled built environments.

| PRJEB27640 | ENA

Project description:Xiamen coastal_SIP_Antibiotics

| PRJNA1150672 | ENA

Defining the Secrebiome: the expressed secretome of the gut microbiome and its role in obese Mexican children

Project description:high throughput sequencing of the metagenome of mexican children

2020-03-16 | GSE143207 | GEO

Project description:Biodiversity Monitoring in Remote Marine Environments: Advancing Purpose-Built Environmental DNA/RNA Sampling Workflows

| PRJNA1138772 | ENA

Silent recognition by Toll-like receptor 5 of flagellins from human gut commensal bacteria

Project description:Flagellins from commensal bacteria can be weak Toll-like receptor (TLR)5 agonists despite high affinity binding to TLR5, ligands we termed “silent flagellins”. To determine if silent flagellins are detectable in the human gut, endogenous flagellins produced by the microbiota were isolated from stool obtained from a healthy adult female donor. TLR5 was used as bait to enrich for silent flagellins and TLR5-bound flagellins were identified by searching peptides against a custom flagellin database built from metagenome sequences.

2022-10-12 | PXD033249 | Pride

The functional potential of high Arctic permafrost

Project description:The fate of the carbon stocked in permafrost soils following global warming and permafrost thaw is of major concern in view of the potential for increased CH4 and CO2 emissions from these soils. Complex carbon compound degradation and greenhouse gas emissions are due to soil microbial communities, but their composition and functional potential in permafrost soils are largely unknown. Here, a 2 m deep permafrost and its overlying active layer soil were subjected to metagenome sequencing, quantitative PCR, and microarray analyses. The active layer soil and 2 m permafrost soil microbial community structures were very similar, with Actinobacteria being the dominant phylum. The two soils also possessed a highly similar spectrum of functional genes, especially when compared to other already published metagenomes. Key genes related to methane generation, methane oxidation and organic matter degradation were highly diverse for both soils in the metagenomic libraries and some (e.g. pmoA) showed relatively high abundance in qPCR assays. Genes related to nitrogen fixation and ammonia oxidation, which could have important roles following climatic change in these nitrogen-limited environments, showed low diversity but high abundance. The 2 m permafrost soil showed lower abundance and diversity for all the assessed genes and taxa. Experimental biases were also evaluated and showed that the whole community genome amplification technique used caused large representational biases in the metagenomic libraries. This study described for the first time the detailed functional potential of permafrost-affected soils and detected several genes and microorganisms that could have crucial importance following permafrost thaw. A 2m deep permafrost sample and it overlying active layer were sampled and their metagenome analysed. For microarray analyses, 8 other soil samples from the same region were used for comparison purposes.

2010-05-06 | E-GEOD-20073 | biostudies-arrayexpress

hydrocarbon metagenome

Project description:Hydrocarbon resource environments Metagenome

| PRJNA301965 | ENA

Microeukaryotic samples from Xiamen Coastal Waters and Intertidal Sediments

Project description:Microeukaryotic samples from Xiamen Coastal Waters and Intertidal Sediments Metagenome

| PRJNA660188 | ENA

Pseudomonas

Project description:Built Environment Pseudomonas Sequencing

| PRJNA606080 | ENA