Browse
Submit Data
Databases
API
Help

Dataset Information

0 Views

0 Connections

0 Citations

0 Reanalyses

0 Downloads

Omics score: 0

ABSTRACT: Atlantic Halibut population genomics

PROVIDER: PRJNA713807 | ENA |

REPOSITORIES: ENA

ACCESS DATA

Json Xml

Dataset's files

Source:

			Action	DRS
	SRR13943600_1.fastq.gz	Fastqsanger.gz
	SRR13943600_2.fastq.gz	Fastqsanger.gz
	SRR13943700_1.fastq.gz	Fastqsanger.gz
	SRR13943700_2.fastq.gz	Fastqsanger.gz
	SRR13943800_1.fastq.gz	Fastqsanger.gz

Items per page:

1 - 5 of 1536

Similar Datasets

Halibut Developmental Series

Project description:An oligonucleotide microarray containing 50-mer oligonucleotides representing 9277 unique Atlantic halibut genes has been designed, printed and is currently being used for the study of gene expression in developing halibut. The oligonucleotides are based on all of the Atlantic halibut data available at the time of printing; these included ESTs and complete cDNAs derived from the Pleurogene sequencing project as well as sequences deposited in GenBank by other groups as of September 2006. Of the Pleurogene ESTs, 5040 are functionally annotated; the remainder are unknown (1016) or are similar to unannotated sequences in GenBank (1626). In addition to Atlantic halibut features, several control features have been incorporated, including an oligonucleotide representing a heterologous plant gene (92 spots) and empty spots containing buffer only (1344). The array contains 48 subgrids, each comprised of 32 columns and 26 rows. Every feature is printed at least four times as side-by-side quadruplicates, resulting in a microarray containing 39936 features. This microarray has been utilized to identify genes differentially expressed in larval Atlantic halibut during the developmental period from post-hatch to post-metamorphosis. Keywords: Development stage comparison

2008-02-10 | GSE10457 | GEO

Hippoglossus hippoglossus

Project description:Atlantic halibut oocyte transcriptome

| PRJNA714803 | ENA

Hippoglossus hippoglossus

Project description:Hippoglossus hippoglossus (Atlantic halibut) long- and short read genomics data

| PRJNA680301 | ENA

Hippoglossus hippoglossus

Project description:Atlantic Halibut RAD Linkage Map

| PRJNA176886 | ENA

Molecular mechanisms involved in Atlantic halibut egg quality

Project description:Egg quality is of pivotal importance in biomedicine, agriculture, ecology and environmental science because of its tremendous influence on reproductive success or failure in all animals. Despite species specific differences in physiological aspects of early development, the evolutionary conserved stereotypical procedure of cellular events, led us to investigate whether these findings are common with marine fish species of aquaculture interest. Atlantic halibut (Hippoglossus hippoglossus) is a highly prized species in global fish markets with increasing demand to its production. The objectives of this study were 1) to reveal the proteomic profiles of good versus poor quality halibut eggs, 2) to identify proteins that can serve as egg quality markers, and 3) to discover molecular mechanisms determining egg quality using a combination of quantitative proteomics workflows, tandem mass tags (TMT) labeling and parallel reaction monitoring (PRM).

2022-07-06 | PXD029894 | Pride

Project description:Hippoglossus hippoglossus (Atlantic Halibut) genome, fHipHip1

| PRJNA562210 | ENA

Profiling of the embryonic Atlantic halibut (Hippoglossus hippoglossus L.) transcriptome reveals maternal transcripts as potential markers of embryo quality

Project description:Commercial Atlantic halibut (Hippoglossus hippoglossus) farming is restricted by variable oocyte quality, slow growth, and early maturation of male fish. Maternally transferred components regulate early developmental processes; therefore, they have an effect on the future development of an embryo. We profiled components of the transcriptome involved in immune defence as well as germline and muscle development during early developmental stages: 8-cell embryos, germ ring stage, 10-somite stage, and hatched embryos using a 10k oligonucleotide array and quantitative real-time PCR to specifically identify transcripts useful as molecular markers of embryo quality.

2014-09-04 | GSE61051 | GEO

Conservation genomics of Atlantic salmon

Project description:This SuperSeries is composed of the following subset Series: GSE19111: Conservation genomics of Atlantic salmon (Year One) GSE19119: Conservation genomics of Atlantic salmon (Year Two) Refer to individual Series

2010-05-19 | E-GEOD-19170 | biostudies-arrayexpress

Gadus morhua

Project description:Population genomics in Atlantic cod, Gadus morhua

| PRJNA78311 | ENA

Hippoglossus hippoglossus isolate:fHipHip1

Project description:Hippoglossus hippoglossus (Atlantic Halibut) genome, fHipHip1, primary haplotype

| PRJNA562001 | ENA