Browse
Submit Data
Databases
API
Help

Dataset Information

0 Views

0 Connections

0 Citations

0 Reanalyses

0 Downloads

Omics score: 0

ABSTRACT: Raw RNA seq reads of petal transcriptome of Lycoris sprengeri

PROVIDER: PRJNA714286 | ENA |

REPOSITORIES: ENA

ACCESS DATA

Json Xml

Dataset's files

Source:

			Action	DRS
	SRR13966059_1.fastq.gz	Fastqsanger.gz
	SRR13966059_2.fastq.gz	Fastqsanger.gz
	SRR13966060_1.fastq.gz	Fastqsanger.gz
	SRR13966060_2.fastq.gz	Fastqsanger.gz
	SRR13966061_1.fastq.gz	Fastqsanger.gz

Items per page:

1 - 5 of 12

Similar Datasets

Project description:Lycoris sprengeri

| PRJNA579847 | ENA

Project description:Lycoris sprengeri bulb transcriptome

| PRJNA637456 | ENA

Lycoris sprengeri

Project description:Lycoris sprengeri overview

| PRJNA628775 | ENA

Lycoris sprengeri

Project description:Lycoris sprengeri Transcriptome or Gene expression

| PRJNA338590 | ENA

SWATH-MS-Based Proteomics of Amaryllidaceae Alkaloids in Lycoris Species

Project description:We determined the alkaloid content in Lycoris longituba, Lycoris incarnata, and Lycoris sprengeri, and performed a SWATH-MS-based quantitative approach to detect proteome changes in the three Lycoris.

2023-02-23 | PXD040341 |

Lycoris radiata cultivar:Lycoris radiata

Project description:Lycoris radiata cultivar:Lycoris radiata Raw sequence reads

| PRJNA892737 | ENA

Adenoviral vector transduced in vitro differentiated C57bl6 BMDM cells

Project description:Total mRNA was extracted at 48 hour post transduction using Qiagen RNeasy Kits following the manufacture’s protocol.1 ug ofRNAwas used for cDNA library construction and bulk RNA sequencing were performed by Novogene (Sacramento CA). RNA-seq raw data were analysised using Partek Flow. Briefly, sequencing reads were aligned to the mouse or human genome using Spliced Transcripts Alignment to a Reference (STAR 2.5.3a). Aligned reads were then quantified to transcriptome (mm10; Ensembl Transcripts release 100), and normalized (Median Ratio normalization). Differentiated gene expression analysis (DESeq2) were performed to generate raw counts

2024-04-21 | GSE253342 | GEO

Quantitative profiling of differentially expressed miRNAs in siCTL- and siOASL-transfected HUVECs

Project description:Purpose: The goal of this study is to compare endothelial small RNA transcriptome to identify the target of OASL under basal or stimulated conditions by utilizing miRNA-seq. Methods: Endothelial miRNA profilies of siCTL or siOASL transfected HUVECs were generated by illumina sequencing method, in duplicate. After sequencing, the raw sequence reads are filtered based on quality. The adapter sequences are also trimmed off the raw sequence reads. rRNA removed reads are sequentially aligned to reference genome (GRCh38) and miRNA prediction is performed by miRDeep2. Results: We identified known miRNA in species (miRDeep2) in the HUVECs transfected with siCTL or siOASL. The expression profile of mature miRNA is used to analyze differentially expressed miRNA(DE miRNA). Conclusions: Our study represents the first analysis of endothelial miRNA profiles affected by OASL knockdown with biologic replicates.

2022-09-06 | GSE186354 | GEO

Rhizophora mucronata Lam. de novo transcriptome - Gene expression estimation

Project description:Rhizophora mucronata Lam., a prevalent mangrove variety of Indo-Pacific region is reported to defy saline stress up to 40 ppt, but the genome or transcriptome behind this tolerance is yet to be investigated. As an initiative to create a reference sequence database, we have forged a set of 46,366,348 paired end RNA-Seq raw reads of Rhizophora mucronata Lam. leaf tissues from Illumina HiSeq 2500 platform (SRA study accession SRP093200 ; Bioproject accession PRJNA345155). All possible gene transcripts were then reconstructed from the RNA raw seq data and 93960 Trinity assembled, annotated transcripts that are being actively expressed at a given time is proposed (TSA accession GGEC00000000). To estimate gene transcript expression, we used Bowtie 2 programme and successfully aligned back up to 95.14% of the filtered reads to the assembled transcriptome. We allowed up to 1-mismatches in the seed region (length =31bp) and all multiple mapped position were reported. Of all filtered reads about 95.14% of reads from each sample were properly aligned back to the assembled transcriptome. Overall we found 52,153 unique transcripts which have expression >=1 FPKM.

2018-03-22 | GSE112162 | GEO

Lycoris aurea

Project description:Lycoris aurea Raw sequence reads

| PRJNA1106235 | ENA