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Transcriptomics data of blood and brain from the YAC128 Huntington's disease mouse model [brain]

ABSTRACT: Transcriptomics data of blood and brain from the YAC128 Huntington's disease mouse model [brain]

PROVIDER: PRJNA718064 | ENA |

REPOSITORIES: ENA

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			Action	DRS
	SRR14087900_1.fastq.gz	Fastqsanger.gz
	SRR14087900_2.fastq.gz	Fastqsanger.gz
	SRR14087901_1.fastq.gz	Fastqsanger.gz
	SRR14087901_2.fastq.gz	Fastqsanger.gz
	SRR14087902_1.fastq.gz	Fastqsanger.gz

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Transcriptomics data of blood and brain from the YAC128 Huntington's disease mouse model [blood]

Project description:Transcriptomics data of blood and brain from the YAC128 Huntington's disease mouse model [blood]

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Transcriptomics data of blood and brain from the YAC128 Huntington's disease mouse model [blood]

Project description:Therapeutic development for Huntington's disease (HD) would benefit from a method to monitor disease progression and treatment efficacy, ideally using blood biomarkers. Previously, HD-specific signatures were identified in human blood which adequately represented signatures in human brain, showing biomarker potential. Since drug candidates are normally first screened in rodent models, we aimed to identify HD-signatures in blood and brain of YAC128 HD mice and validate these with our previously identified human signatures. In both brain and blood, we identified HD-associated modules using Weighted Gene Co-expression Network Analysis (WGCNA) representing various biological processes previously associated with HD. Disease-related processes in blood and brain showed substantial overlap, including processes related to protein modification, cell cycle, RNA splicing, nuclear transport and vesicle-mediated transport. Moreover, the disease-associated processes shared between mouse blood and brain were highly comparable to those previously identified in human blood and brain. In addition to shared pathology, we identified HD-associated blood modules showing blood-specific pathology.

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Transcriptomics data of blood and brain from the YAC128 Huntington's disease mouse model [brain]

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Transcriptomics data of blood and brain from the YAC128 Huntington's disease mouse model

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BBBomics - Human Blood Brain Barrier Transcriptomics Hub

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BBBomics - Human Blood Brain Barrier Transcriptomics Hub [RNA-seq]

Project description:Functional and structural dysfunction of the blood brain barrier (BBB) leads to severe alterations in brain physiology and is believed to trigger neurodegeneration. To investigate the molecular mechanisms driving the BBB dysfunction, very few human BBB cell culture models are available; of which, the human microvascular endothelial cell line (hCMEC/D3) is the most widely used. Thus far, array-based approaches or targeted seqeuncing based approaches have been employed to characterize the gene expression of the hCMEC/D3 model. However,The goal of this study is to perform deep transcriptomic sequencing of the BBB cell line and obtain features like gene expression, expressed single nucleotide variants, alternate splice forms, circular RNAs, long non-coding RNAs and micro RNAs. We have developed blood brain barriers transcriptomics landscape using RNA sequencing and micro RNA seqeuncing data obtained from replicates of hCMEC/D3 BBB cell line.

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