Browse
Submit Data
Databases
API
Help

Dataset Information

0 Views

0 Connections

0 Citations

0 Reanalyses

0 Downloads

Omics score: 0

ABSTRACT: Garcinia anomala Chloroplast Genome sequencing and assembly

PROVIDER: PRJNA726157 | ENA |

REPOSITORIES: ENA

ACCESS DATA

Json Xml

Dataset's files

Source:

			Action	DRS
	SRR14356990_1.fastq.gz	Fastqsanger.gz
	SRR14356990_2.fastq.gz	Fastqsanger.gz

Items per page:

1 - 2 of 2

Similar Datasets

Garcinia anomala

Project description:Garcinia anomala Chloroplast Genome sequencing and assembly

| PRJNA726064 | ENA

Project description:chloroplast genome of Garcinia paucinervis

| PRJNA708261 | ENA

Project description:Chloroplast genome analysis of Garcinia L

| PRJNA1069344 | ENA

Project description:The complete chloroplast genome of Garcinia yunnanensis.

| PRJNA1068492 | ENA

Project description:The complete chloroplast genome of Garcinia esculenta (Clusiaceae)

| PRJNA1050176 | ENA

RNA-seq of Arabidopsis thaliana wild-type and a putative chloroplast ribosome biogenesis mutant AtRsgA homozygous knockout

Project description:In this study, we have characterized a putative chloroplast ribosome assembly factor. To elucidate transcriptional responses caused by decreased chloroplast function, we have measured the transcriptome of wild-type and knock-down seedlings.

2018-08-16 | E-MTAB-6866 | biostudies-arrayexpress

Garcinia mangostana

Project description:Garcinia mangostana Genome sequencing and assembly

| PRJNA301534 | ENA

Cossypha anomala

Project description:Cossypha anomala Genome sequencing and assembly

| PRJNA733796 | ENA

Amphisbaena anomala

Project description:Amphisbaena anomala Genome sequencing and assembly

| PRJNA792279 | ENA

The comparison for the transcript levels of chloroplast-encoded genes between wild type (Col-0) and pbf8 mutants

Project description:We found that thylakoid-anchored protein PBF8 is a key regulator for Photosystem I (PSI) biogenesis. To explore the role of PBF8 in regulating chloroplast gene expression, we performed the RNA-seq to compare the the transcript levels of chloroplast-encoded genes between wild type (Col-0) and pbf8 mutants. To this end, we isolated the total RNA form 12-day-old wild type and pbf8 seedlings grown on the MS medium under long-day conditions (14 h light, 10 h dark) at 22 ºC and with a light intensity of 80 µmol m-2 s-1. The rRNAs were deleted using the Ribo-Zero Kit (Epicentre). The resulting rRNA-depleted RNA was used for preparing the sequencing library with NEBNext Single Cell/Low input library Prep Kit. The libraries were pooled and sequenced on an Illumina Nova 6000 system with 150-bp pair-end reads. Finally, our results show that the transcript accumulation for chloroplast-encoded PSI subunit and assembly factor genes between the wild type (Col-0) and pbf8 samples, suggesting PBF8 may not affect the transcript levels of chloroplast-encoded PSI subunits and assembly factors in chloroplasts.

2024-01-24 | GSE239827 | GEO

OmicsDI is part of the ELIXIR infrastructure

OmicsDI is an Elixir interoperability service. Learn more ›

Tweets

OmicsDI Databases

PRIDE
PeptideAtlas
MassIVE
JPOST Repository
Physiome Model Repository

EGA
EVA
ENA
LINCS
PAXDB
Cell Collective

MetaboLights
Metabolomics Workbench
MetabolomeExpress
GNPS
BioModels
FAIRDOMHub

ArrayExpress
dbGaP
ExpressionAtlas
GEO
NODE

Information

Databases
Help
API
Contact us
Code on GitHub
Terms of use
Submit Data