Browse
Submit Data
Databases
API
Help

Dataset Information

0 Views

0 Connections

0 Citations

0 Reanalyses

0 Downloads

Omics score: 0

Biofilm containing diatom and bacteria

ABSTRACT: biofilm containing diatom and bacteria Raw sequence reads

PROVIDER: PRJNA730671 | ENA |

REPOSITORIES: ENA

ACCESS DATA

Json Xml

Dataset's files

Source:

			Action	DRS
	SRR15204667_subreads.fastq.gz	Fastqsanger.gz
	SRR15204668_subreads.fastq.gz	Fastqsanger.gz
	SRR15204669_subreads.fastq.gz	Fastqsanger.gz
	SRR15204670_subreads.fastq.gz	Fastqsanger.gz
	SRR15204671_subreads.fastq.gz	Fastqsanger.gz

Items per page:

1 - 5 of 12

Similar Datasets

diatom-bacteria co-cultures, axenic diatom and bacteria controls 16S rDNA

Project description:diatom-bacteria co-cultures, axenic diatom and bacteria controls 16S rDNA Raw sequence reads

| PRJNA782965 | ENA

diatom-bacteria co-cultures, axenic diatom Seminavis robusta and bacteria controls

Project description:diatom-bacteria co-cultures, axenic diatom Seminavis robusta and bacteria controls Raw sequence reads 16S rRNA

| PRJNA779026 | ENA

diatom

Project description:diatom Raw sequence reads

| PRJNA433279 | ENA

Characterization of the cellular adaptation during biofilm formation in Gram positive bacteria

Project description:Cellular adaptation during biofilm formation in Gram positive bacteria

2020-12-05 | GSE162709 | GEO

Flavobacterial exudates disrupt cell cycle progression and metabolism of the diatom Thalassiosira pseudonana

Project description:Phytoplankton and bacteria form the base of marine ecosystems and their interactions drive global biogeochemical cycles. The effect of bacteria and bacteria-produced compounds on diatoms range from synergistic to pathogenic and can affect the physiology and transcriptional patterns of the interacting diatom. Here, we investigate physiological and transcriptional changes in the marine diatom Thalassiosira pseudonana induced by extracellular metabolites of a known antagonistic bacterium Croceibacter atlanticus. Mono-cultures of C. atlanticus released compounds that inhibited diatom cell division and elicited a distinctive phenotype of enlarged cells with multiple plastids and nuclei, similar to what was observed when the diatom was co-cultured with the live bacteria. The extracellular C. atlanticus metabolites induced transcriptional changes in diatom pathways that include recognition and signaling pathways, cell cycle regulation, carbohydrate and amino acid production, as well as cell wall stability. Phenotypic analysis showed a disruption in the diatom cell cycle progression and an increase in both intra- and extracellular carbohydrates in diatom cultures after bacterial exudate treatment. The transcriptional changes and corresponding phenotypes suggest that extracellular bacterial metabolites, produced independently of direct bacterial-diatom interaction, may modulate diatom metabolism in ways that support bacterial growth.

2022-06-24 | GSE197934 | GEO

Biofilm bacteria Metagenome

Project description:Biofilm bacteria Metagenome

| PRJNA529279 | ENA

Associated bacteria affect sexual reproduction by altering gene expression and metabolic processes in a biofilm inhabiting diatom (Seminavis robusta)

Project description:The goals of this study are to compare NGS-derived transcriptome profiling (RNA-seq) of Seminavis robusta in presence and absence of associated bacterial spent medium (Maribacter sp. and Roseovarius sp.) in order to highlight the effect of bacterial exudates on diatom gene expression and metabolic processes.

2019-07-15 | GSE131727 | GEO

biofilm metagenome

Project description:bacteria in biofilm Raw sequence reads

| PRJNA386389 | ENA

Project description:Phytoplankton-derived metabolites fuel a large fraction of heterotrophic bacterial production in the global ocean, yet methodological challenges have limited our knowledge of organic molecules transferred between these two microbial groups. In an experimental bloom study in which the diatom Thalassiosira pseudonana was co-cultured with three heterotrophic marine bacteria, we concurrently measured diatom endometabolites (i.e., potential exometabolite supply) by nuclear magnetic resonance (NMR) spectroscopy and bacterial gene expression (i.e., potential exometabolite uptake) by metatranscriptomic sequencing.

2021-08-31 | ST001944 | MetabolomicsWorkbench

Multi-Species Communities Containing Ammonia-Oxidising Bacteria

Project description:Multi-Species Communities Containing Ammonia-Oxidising Bacteria 16S metabarcoding raw sequence reads

| PRJNA552789 | ENA