Browse
Submit Data
Databases
API
Help

Dataset Information

0 Views

0 Connections

0 Citations

0 Reanalyses

0 Downloads

Omics score: 0

Anaplasma phagocytophilum strain:AKS2020-120P

ABSTRACT: Anaplasma phagocytophilum strain:AKS2020-120P Genome sequencing and assembly

PROVIDER: PRJNA736255 | ENA |

REPOSITORIES: ENA

ACCESS DATA

Json Xml

Dataset's files

Source:

			Action	DRS
		Other

Items per page:

1 - 1 of 1

Similar Datasets

Anaplasma phagocytophilum

Project description:Anaplasma phagocytophilum Genome sequencing

| PRJNA597686 | ENA

Promyelocytic cells response to Anaplasma phagocytophilum infection

Project description:Gene expression profiling of human promyelocytic cells in response to infection with Anaplasma phagocytophilum. Total RNA derived from 3DPI Anaplasma phagocytophilum-infected HL-60 cells was labeled with A647 and total RNA derived from 3DPI Mock-infected HL-60 cells was labeled with A546. For each, 5 µg of total RNA was labeled using Genisphere Array900, Alexa Fluor dyes and SuperscriptII. Slide scanned with ScanArray Express and images processed with GenePix Pro version 4.0. Normalized log ratios VALUES determined using R-project statistical environment (http://www.r-project.org) and Bioconductor (http://www.bioconductor.org) through the GenePix AutoProcessor (GPAP, http://darwin.biochem.okstate.edu/gpap) website (P. Ayoubi, unpublished results). Keywords: time-course

2005-02-25 | GSE1694 | GEO

Gene expression profiles of European wild boar naturally infected with Anaplasma phagocytophilum.

Project description:Anaplasma phagocytophilum infects a wide variety of host species and causes the diseases granulocytic anaplasmosis in humans, horses and dogs and tick-borne fever in ruminants. The objective of this research was to characterize differential gene expression in wild boar naturally infected with A. phagocytophilum by microarray hybridization using the GeneChip® Porcine Genome Array

2009-05-12 | GSE15766 | GEO

Anaplasma phagocytophilum strain:KZ-A1

Project description:Anaplasma phagocytophilum strain:KZ-A1 Genome sequencing

| PRJNA516094 | ENA

Promyelocytic cells response to Anaplasma phagocytophilum infection

Project description:Gene expression profiling of human promyelocytic cells in response to infection with Anaplasma phagocytophilum. Total RNA derived from 3DPI Anaplasma phagocytophilum-infected HL-60 cells was labeled with A647 and total RNA derived from 3DPI Mock-infected HL-60 cells was labeled with A546. For each, 5 Âµg of total RNA was labeled using Genisphere Array900, Alexa Fluor dyes and SuperscriptII. Slide scanned with ScanArray Express and images processed with GenePix Pro version 4.0. Normalized log ratios VALUES determined using R-project statistical environment (http://www.r-project.org) and Bioconductor (http://www.bioconductor.org) through the GenePix AutoProcessor (GPAP, http://darwin.biochem.okstate.edu/gpap) website (P. Ayoubi, unpublished results).

2010-06-10 | E-GEOD-1694 | biostudies-arrayexpress

Macrophage Gene Expression Upon Infection with Anaplasma phagocytophilum in the Presence and Absence of the Tick Salivary Protein SL2

Project description:Previously, we observed that a tick salivary protein named sialostatin L2 (SL2) mitigates caspase 1-mediated inflammation upon Anaplasma phagocytophilum infection. Here we are performing next-generation sequencing to determine the global effect of SL2 upon A. phagocytophilum infection of macrophages. BMDMs were treated by 4 different conditions (including non-treated, treated by SL2, treated by Anaplasma, and by Anaplasma and SL2, each treatment was performed in triplicate) followed by the extraction of total RNA and deep sequencing by Illumina

2016-07-18 | E-GEOD-63647 | biostudies-arrayexpress

Global gene transcription analysis of Anaplasma phagocytophilum in tick and human cells using tiling microarrays

Project description:A whole genome tiling microarray based on the published sequence of the Anaplasma phagocytophilum (Ap) strain Hz genome was used to measure transcriptional activity of Ap grown to late stage in three cell lines representing the diversity of host cells naturally infected by Ap: two human cell lines, HL-60 (promyelocytic leukocyte) and HMEC-1 (microvascular endothelial), and the tick (Ixodes scapularis) cell line ISE6. Keywords: cell type comparison

2008-08-04 | GSE11487 | GEO

Anaplasma phagocytophilum str. HGE1

Project description:Anaplasma phagocytophilum HGE1 Genome Sequencing

| PRJNA171710 | ENA

Anaplasma phagocytophilum str. CRT38

Project description:Anaplasma phagocytophilum CRT38 Genome Sequencing

| PRJNA183838 | ENA

Macrophage Gene Expression Upon Infection with Anaplasma phagocytophilum in the Presence and Absence of the Tick Salivary Protein SL2

2016-07-18 | GSE63647 | GEO