Browse
Submit Data
Databases
API
Help

Dataset Information

0 Views

0 Connections

0 Citations

0 Reanalyses

0 Downloads

Omics score: 0

Salsola

ABSTRACT: Stranded transcriptome sequencing of three species of the genus Salsola (Amaranthaceae)

PROVIDER: PRJNA736748 | ENA |

REPOSITORIES: ENA

ACCESS DATA

Json Xml

Dataset's files

Source:

			Action	DRS
	SRR14783907_1.fastq.gz	Fastqsanger.gz
	SRR14783907_2.fastq.gz	Fastqsanger.gz
	SRR14783908_1.fastq.gz	Fastqsanger.gz
	SRR14783908_2.fastq.gz	Fastqsanger.gz
	SRR14783909_1.fastq.gz	Fastqsanger.gz

Items per page:

1 - 5 of 6

Similar Datasets

Salsola tragus

Project description:Salsola tragus Genome sequencing

| PRJNA497767 | ENA

Salsola tragus

Project description:Salsola tragus overview

| PRJNA1213922 | ENA

Salsola sinkiangensis

Project description:Salsola sinkiangensis Genome sequencing and assembly

| PRJNA1138491 | ENA

Salsola tragus

Project description:Salsola tragus Genome sequencing and assembly Alternate haplotype

| PRJNA1157338 | ENA

Salsola tragus

Project description:Salsola tragus Genome sequencing and assembly principal haplotype

| PRJNA1157337 | ENA

Salsola soda

Project description:RNA seq raw reads of Salsola soda

| PRJNA321979 | ENA

Salsola tragus isolate:Weld

Project description:Salsola tragus isolate:Weld Genome sequencing and assembly

| PRJNA1153015 | ENA

Amaranthaceae s.l.

Project description:Stranded transcriptome sequencing of 17 species from the plant family Amaranthaceae s.l.

| PRJNA640363 | ENA

RNA seq of different species of Salsoleae with different photosynthetic types

Project description:Cotyledons and leaf transcriptomes of species of Salsoleae with different photosynthetic types were de novo assembled and analyzed to provide a better understanding of differential gene expression between C3, C2 and C4 species. Total RNA of cotyledons and leaves of different species of Salsoleae with different photosynthetic types (C3 Salsola webbii, C2 Salsola divaricata, C4 Salsola oppositifolia, C4 Hammada scoparia) were isolated with RNeasy Plant Mini Kit (Qiagen) following Standard protocol (January 2011) and including DNase Digestion with RNase-Free DNase Set (Qiagen). 500 ng were used for cDNA library generation conducted with TruSeq RNA Sample Preperation Kit (Illumina Inc.) following Low Sample Protocol (TruSeq RNA Sample Preparation v2 Guide, Illumina Proprietary, Part # 15026495 Rev. C, May 2012). Sequencing of single reads was performed on an Illumina HiSeq2000 platform.

2017-12-29 | E-MTAB-5778 | biostudies-arrayexpress

Thermotoga species transcription on glucose and a mix of polysaccharides

Project description:Hyperthermophilic bacteria of the genus Thermotoga are known to utilize a wide range of simple and complex polysaccharides. T. maritima's transcriptional response to a variety of mono- and poly-saccharides was previously studied to assign functions to genes involved in carbohydrate uptake and utilization. To compare and contrast closely-related members of the Thermotoga genus, a four-species microarray was developed by expanding a whole genome T. maritima array to include unique genes from three other species (T. neapolitana, T. petrophila, and T. sp. RQ2). This multi-species array was used to investigate the diversity of the genus, specifically the response of each of the four species to a mixture of polysaccharides (galactomannan, glucomannan, xylan, pectin, lichenan, and carboxymethyl cellulose).

2012-01-05 | GSE29557 | GEO

OmicsDI is part of the ELIXIR infrastructure

OmicsDI is an Elixir interoperability service. Learn more ›

Tweets

OmicsDI Databases

PRIDE
PeptideAtlas
MassIVE
JPOST Repository
Physiome Model Repository

EGA
EVA
ENA
LINCS
PAXDB
Cell Collective

MetaboLights
Metabolomics Workbench
MetabolomeExpress
GNPS
BioModels
FAIRDOMHub

ArrayExpress
dbGaP
ExpressionAtlas
GEO
NODE

Information

Databases
Help
API
Contact us
Code on GitHub
Terms of use
Submit Data