Browse
Submit Data
Databases
API
Help

Dataset Information

0 Views

0 Connections

0 Citations

0 Reanalyses

0 Downloads

Omics score: 0

ABSTRACT: Sycophila associated with North American oak galls

PROVIDER: PRJNA748053 | ENA |

REPOSITORIES: ENA

ACCESS DATA

Json Xml

Dataset's files

Source:

			Action	DRS
	SRR15357623_1.fastq.gz	Fastqsanger.gz
	SRR15357623_2.fastq.gz	Fastqsanger.gz
	SRR15357624_1.fastq.gz	Fastqsanger.gz
	SRR15357624_2.fastq.gz	Fastqsanger.gz
	SRR15357625_1.fastq.gz	Fastqsanger.gz

Items per page:

1 - 5 of 60

Similar Datasets

Project description:UCEs of kleptoparasitic wasps associated with oak galls

| PRJNA1001032 | ENA

Population genetics context of ancient human genome sequence of an extinct Palaeo-Eskimo

Project description:To study the population genetics context of the Saqqaq individual we carried out Illumina Bead-Array-based genotyping on four native North American and twelve north Asian populations.

2010-11-30 | GSE22494 | GEO

Emory_Pediatric_Strains_1

Project description:Array CGH analysis of Helicobacter pylori strains isolated from a North American cohort of symptomatic pediatric patients. Keywords: genotyping_design

2009-11-05 | GSE13317 | GEO

Project description:Transcriptomic study of galls in Oak

| PRJNA665779 | ENA

Comparative transcriptome reprogramming in oak galls containing sexual or asexual generations of parasitoid wasps

Project description:Oak galls form when gall wasps lay their eggs into part of the tree; in some galls, this attachment point to the host consists of only a few cells. The gall itself comprises entirely of host tissue; however, the initiation, development, and physical appearance are controlled by the inducer. This raises the intriguing question of the molecular mechanisms underlying gall formation, by which one or a small number of cells are reprogrammed and commit to a novel developmental path. Gall wasps undergo two generations each year, and the galls formed by these two generations exhibit markedly different appearances. We sequenced the transcriptomes of both the sexual and asexual generations of Neuropterus quercusbaccarum and Neuroterus numismalis. The transcriptomes of the generations that occur at the same time of year are more similar to each other than they are to the opposite generation of their respective species.

2024-06-18 | GSE244168 | GEO

RNA sequencing for candidate gene identification for habitat specific clock varaition in natural ecotypes of Neurospora discreta

Project description:Purpose: The goal of the current study was to find the candidate genes responsible for the habita specific clock variation in N. discreta. Methods: We performed RNA-seq experiment using four strains ; African parent (FGSC8831), North American parent (FGSC 8578) and two representative progeny representing African clock phenotype (N309-89) and North American clock phenotype (N309-50). Results: We identified one candidate gene that meets our criteria; confirmed it's expression by qPCR and it's expression pattern is associated with parent genotype. Conclusions: Our approach using the expression profiles and SNP data of two parents and two representative progeny led us to identify a candidate gene for a complex clock adaptation phenotype.

2018-09-18 | GSE120053 | GEO

Project description:North American Cistaceae-associated ectomycorrhizal fungi

| PRJNA1073980 | ENA

Gene expression response of wolf epidermal keratinocytes to PolyI:C and canine distemper virus

Project description:The goal of the study was to test whether CBD103 genotype of North American gray wolves impacts the gene expression response to polyI:C or to live canine distemper virus. We established 24 primary cultures of epidermal keratinocytes from skin punches of North American gray wolves, and also generated an immortalized keratinocyte line and a CRISPR/Cas9 edited cell line. We evaluated the gene expression response of cells to either 24 hours challenge with 1 ug/ml polyI:C or to five days challenge with live canine distemper virus (100 TCID50/ml). Every challenged cell culture had a paired null control sample (plated and collected at same time points).

2021-05-06 | GSE163163 | GEO

Bluestem transcription profiles - Konza 2005

Project description:We measured transcriptional profiles of individuals of Andropogon gerardii, a C4 grass native to North American grasslands, in a field experiment in which both temperature and precipitation have been manipulated to simulate key aspects of forecasted climate change.

2009-06-10 | GSE16418 | GEO

Project description:Nanopore sequencing of the genomes of asexual oak galls

| PRJNA1027974 | ENA