Browse
Submit Data
Databases
API
Help

Dataset Information

0 Views

0 Connections

0 Citations

0 Reanalyses

0 Downloads

Omics score: 0

Gossypium hirsutum

ABSTRACT: upland cotton Raw RNAseq reads

PROVIDER: PRJNA752503 | ENA |

REPOSITORIES: ENA

ACCESS DATA

Json Xml

Dataset's files

Source:

			Action	DRS
	SRR15358144_1.fastq.gz	Fastqsanger.gz
	SRR15358144_2.fastq.gz	Fastqsanger.gz
	SRR15358145_1.fastq.gz	Fastqsanger.gz
	SRR15358145_2.fastq.gz	Fastqsanger.gz
	SRR15358146_1.fastq.gz	Fastqsanger.gz

Items per page:

1 - 5 of 44

Similar Datasets

Gossypium hirsutum

Project description:Upland cotton Raw sequencing

| PRJNA336458 | ENA

Gossypium hirsutum

Project description:2 samples of upland cotton Raw sequence reads

| PRJNA831598 | ENA

Gossypium hirsutum

Project description:Transcriptome data of two upland cotton and resequencing data of one upland cotton Raw sequence reads

| PRJNA848260 | ENA

Gossypium hirsutum

Project description:Upland cotton Transcriptome

| PRJNA454052 | ENA

Gossypium hirsutum leaves proteomics

Project description:In this study, the leaves of upland cotton X142 and its corresponding fuzzness-lintness mutant X142fl were used as materials. Proteomic techniques were used to analysis the protein abundant between the leaves of upland cotton and MaxQuant software was selected to analyze the proteomic data.

2019-08-07 | PXD014935 |

Gossypium hirsutum strain:upland cotton

Project description:Gossypium hirsutum strain:upland cotton Raw sequence reads

| PRJNA670627 | ENA

cDNA expression profiles of +7 DPA wild-type upland cotton (Gossypium hirsutum cv. Xuzhou142) ovules over the one-year cycle

Project description:A cDNA library from 0-10 day post anthesis cotton ovules was established to study genes expressed in cotton ovule during initiation and quickly elongation period. We randomly sequenced over 100,000 ESTs from this library and acquired a gene pool of more than 28,000 UniESTs. The cotton UniESTs were then PCR-amplified and printed onto microarray. This array is comprised of about 28000 high-quality cotton cDNAs (with average length>750bp) and external controls. To study the different growth potential of cotton fibers in a one-year cycle, we then hybridized the array with RNA samples derived from +7 DPA wild-type upland cotton fibers in four different seasons, respectively.

2010-06-01 | GSE16802 | GEO

Cotton (Gossypium hirsutum L.) root transcriptional response to the southern Root-Knot Nematode (RKN) Meloidogyne incognita infestation

Project description:As an initial step to explore the cotton (Gossypium hirsutum L.) root transcriptional response to the southern Root-Knot Nematode (RKN) Meloidogyne incognita infestation, conventional heirloom G. hirsutum (Gh) cultivars [susceptible Acala SJ-2 (SJ2), moderately resistant Upland Wild Mexico Jack Jones (WMJJ), and resistant Acala NemX] that have been shown to be useful as an informative genetic model for detecting and introgressing RKN resistance genes into commercial Upland cotton were used to enlighten the molecular mechanisms and gene expression of RKN resistance. Using the next generation sequencing (NGS) Illumina MiSeq and HiSeq, we performed RNA-seq profiling in roots with disease progression of 10 days and collected from 23 days old plants of SJ2, WMJJ, and NemX. With three biological replicates of each treatment from each cultivar, plants were subjected to RKN-infestation and non-infested control developing a total of 18 RNA-seq libraries

2022-04-01 | GSE190503 | GEO

Gossypium hirsutum

Project description:Cotton Raw sequence reads

| PRJNA380485 | ENA

Gossypium hirsutum

Project description:Cotton Raw sequence reads

| PRJNA543916 | ENA