Browse
Submit Data
Databases
API
Help

Dataset Information

0 Views

0 Connections

0 Citations

0 Reanalyses

0 Downloads

Omics score: 0

ABSTRACT: Transcriptome sequencing of tapping panel dryness affected rubber trees

PROVIDER: PRJNA752925 | ENA |

REPOSITORIES: ENA

ACCESS DATA

Json Xml

Dataset's files

Source:

			Action	DRS
	SRR15372761_1.fastq.gz	Fastqsanger.gz
	SRR15372761_2.fastq.gz	Fastqsanger.gz
	SRR15372762_1.fastq.gz	Fastqsanger.gz
	SRR15372762_2.fastq.gz	Fastqsanger.gz
	SRR15372763_1.fastq.gz	Fastqsanger.gz

Items per page:

1 - 5 of 18

Similar Datasets

RNAseq analysis of latex samples from healthy and Tapping Panel Dryness-affected trees.

Project description:ngs2014_07_hevea-hevea_tpd-seq-RNAseq analysis of latex samples from healthy and Tapping Panel Dryness-affected trees.-Identification of Tapping Panel Dryness (TPD)-affected trees in a polyclonal trials grown under standard condition. Trees were tapped since November 2010 every 2 days. Latex yield and TPD occurrence were monitored as well as latex RNA samples were collected twice a year for further analysis. At the end of the experiment, gene expression in latex of healthy and TPD trees were compared.

2018-06-06 | GSE101568 | GEO

HHbFPS1 may play an important role in the effect of tapping panel dryness on the natural rubber biosynthesis in Hevea brasiliensis latex

Project description:Tapping panel dryness (TPD) seriously affects the natural rubber (NR) production of Hevea brasiliensis (rubber tree). Several studies have speculated that TPD influences NR biosynthesis in the latex of rubber trees based on the expression changes of NR biosynthesis-related genes. In this study, iTRAQ analysis of latex were carried out to reveal the molecular mechanism of TPD affecting rubber trees NR biosynthesis activity and molecular weight.

2023-05-10 | PXD027892 | Pride

Transcriptome sequencing and analysis of rubber tree (Hevea brasiliensis Muell.) to discover putative genes associated with tapping panel dryness (TPD)

Project description:This study is committed to de novo sequencing and comparative analysis of the transcriptomes of healthy (H) and Tapping panel dryness (TPD)-affected (T) rubber trees to identify the genes and pathways related to the TPD. Total raw reads of 34,632,012 and 35,913,020 bp were obtained from H and T library, respectively using Illumina Hiseq 2000 sequencing technology. De novo assemblies yielded 141,456 and 169,285 contigs, and 96,070 and 112,243 unigenes from H and T library, respectively. Among 66535 genes, 107021 genes were identified as differential expressed genes between H and T library via comparative transcript profiling. A majority of genes involved in natural rubber biosynthesis and jasmonate synthesis with most potential relevance in TPD occurrence were found to be differentially expressed. In TPD-affected trees, the expression of most genes related to the latex biosynthesis and jasmonate synthesis was severely inhibited and it probably the direct cause of the TPD. Our de novo transcriptome data sets provide a significant resource for the discovery of genes related to TPD and improve our understanding the occurrence and maintainace of TPD.

2015-03-25 | GSE67214 | GEO

Identification of up-regulated proteins in TPD affected rubber tree (Hevea brasiliensis Muell. Arg.) by MALDI-TOF MS/MS analysis

Project description:Identification of proteins associated with Tapping Panel Dryness (TPD) syndrome in rubber tree.

2016-12-05 | PXD005197 | Pride

Identification of up-regulated proteins in TPD affected rubber tree (Hevea brasiliensis Muell. Arg.) by MALDI-TOF MS/MS analysis

Project description:Identification of proteins associated with Tapping Panel Dryness (TPD) syndrome in rubber tree.

2016-12-24 | PXD005604 | Pride

Identification of down-regulated proteins in TPD affected rubber tree (Hevea brasiliensis Muell. Arg.) by MALDI-TOF MS/MS analysis

Project description:Identification of proteins associated with Tapping Panel Dryness (TPD) syndrome in rubber tree.

2016-12-24 | PXD005543 | Pride

Identification of down-regulated proteins in TPD affected rubber tree (Hevea brasiliensis Muell. Arg.) by MALDI-TOF MS/MS analysis

Project description:Identification of proteins associated with Tapping Panel Dryness (TPD) syndrome in rubber tree.

2017-01-16 | PXD005609 | Pride

Hevea brasiliensis

Project description:RNAseq analysis of latex samples from healthy and Tapping Panel Dryness-affected trees.

| PRJNA394848 | ENA

Proteome Analysis Identified Key Proteins in Response to Tapping Panel Dryness in Rubber Trees

Project description:Currently, one of the most serious threats in rubber tree is the tapping panel dryness (TPD) that greatly restricts the natural rubber production. Over tapping or ethephon stimulation is regarded as the main cause of TPD occurrence. Although extensive studies have been carried out, the molecular mechanism on the TPD still remains puzzled. In the present study, TMT proteome analysis of barks of rubber trees were performed to extend our understanding of the nature and molecular mechanism underlying TPD.

2023-10-08 | PXD045968 |

Proteome Analysis of the Proteins Related with the Recovery of Tapping Panel Dryness in Rubber Trees

Project description:Tapping panel dryness (TPD) in rubber tree has become the most severe restricting factor of natural rubber production. To date, there is no effective measures to prevent and control TPD. Previous studies were focused on analyzing the molecular mechanism underlying TPD occurrence. However, few researches have been carried out about the mechanism of TPD recovery.

2024-11-06 | PXD057557 |

OmicsDI is part of the ELIXIR infrastructure

OmicsDI is an Elixir interoperability service. Learn more ›

Tweets

OmicsDI Databases

PRIDE
PeptideAtlas
MassIVE
JPOST Repository
Physiome Model Repository

EGA
EVA
ENA
LINCS
PAXDB
Cell Collective

MetaboLights
Metabolomics Workbench
MetabolomeExpress
GNPS
BioModels
FAIRDOMHub

ArrayExpress
dbGaP
ExpressionAtlas
GEO
NODE

Information

Databases
Help
API
Contact us
Code on GitHub
Terms of use
Submit Data