Browse
Submit Data
Databases
API
Help

Dataset Information

0 Views

0 Connections

0 Citations

0 Reanalyses

0 Downloads

Omics score: 0

RNA-Seq of E. coli DY330 in different growth phases

ABSTRACT: RNA-Seq of E. coli DY330 in different growth phases

PROVIDER: PRJNA753051 | ENA |

REPOSITORIES: ENA

ACCESS DATA

Json Xml

Dataset's files

Source:

			Action	DRS
	SRR15373456.fastq.gz	Fastqsanger.gz
	SRR15373457.fastq.gz	Fastqsanger.gz
	SRR15373458.fastq.gz	Fastqsanger.gz
	SRR15373459.fastq.gz	Fastqsanger.gz
	SRR15373460.fastq.gz	Fastqsanger.gz

Items per page:

1 - 5 of 9

Similar Datasets

RNA-Seq of E. coli DY330 in different growth phases

Project description:To quantify the transcription level of genes for Escherichia coli DY330 in different growth phases a series of RNA-Seq experiments was performed.

2022-01-01 | GSE181687 | GEO

RNA-seq analysis of Eubacterium limosum KIST612 across different carbon/energy/electron sources and growth phases.

Project description:RNA-seq analysis of Eubacterium limosum KIST612 across different carbon/energy/electron sources and growth phases.

| PRJNA627859 | ENA

ChIP-Seq experiment for the global regulators, CRP and Fis in early and mid exponential growth phases

Project description:We have performed ChIP-Seq experiment for the global regulators, CRP and Fis in early and mid exponential growth phases respectively in Escherichia coli K12 MG1655. The dataset contains the genome wide binding patterns of Fis and CRP in the wildtype and the mutant strains

2016-12-13 | GSE92255 | GEO

Crosstalk between global regulators CRP and FIS in E. coli.

Project description:To understand the influence of global transcription regulators Fis and CRP on global gene expression in different growth phases of E. coli.

2017-10-03 | GSE104504 | GEO

Transcription profiling of N. gonorrhoeae grown on solid media or on liquid media at different growth phases

Project description:A study of the transcriptional profiles of N. gonorrhoeae on solid or in liquid media and at different growth phases

2008-12-10 | E-MEXP-1384 | biostudies-arrayexpress

Transcription profiling of E. coli wild type and fis or hns transcription factor mutants in CSH50, LZ41 and LZ54 strains during different growth phases, with relaxation and hypernegative supercoiling and after norflaxacin treatment

Project description:Comparison of transcript profiles of E. coli CSH50 wild-type and fis or hns mutant cells to distinguish between the genes expressed either in the presence or absence of transcriptional regulators FIS and H-NS during different growth phases. Samples were taken in Mid-exponential phase (ME), Transition to Stationary (TS) and Late Stationary phase (LS). <br><br>Effect of FIS and H-NS on gene expression at relaxed and hypernegative supercoiling level was also studied using LZ41 and LZ54 strains. LZ41 and LZ54 strains contain drug-resistant alleles of different topoisomerase genes. In the LZ41 strain norfloxacin treatment strongly relaxes DNA, whereas in the LZ54 strain the same treatment generates high negative supercoiling (Khodursky et al., 1995, PNAS 92:11801-5; Ziechedrich et al, 1997, Genes Dev. 11:2580-92).

2013-01-30 | E-TABM-86 | biostudies-arrayexpress

Balanced growth of Ecoli MG1655/pTrc99a(NOX-) at different growth rates

Project description:Responses of Escherichia coli MG1655/pTrc99a(NOX-) grown at different growth rates in chemostat in M9 + salts Keywords: different growth rates in parallel

2006-03-08 | GSE4366 | GEO

Growth-phase dependent regulation of transcription by Rsd and 6S RNA

Project description:This entry refers to transcriptome analysis of five E. coli strains: E. coli K-12 MG1655, single deletions of rsd, ssrS, and rpoS, as well as a double deletion of rsd and ssrS, in five growth phases. 25 samples (5 strains in 5 growth phases) with 2 replicates each.

2016-06-10 | E-GEOD-74809 | biostudies-arrayexpress

Global timeospatial map of RNA polymerase in Escherichia coli

Project description:To investigate the relationship between RNA polymerase binding and transcription ChIP-seq on the common house-keeping SigmaD and RNA polymerase beta subunit were coupled with RNA-seq at various growth phases of Escherichia coli in rich media.

2020-07-06 | GSE153815 | GEO

Growth-phase dependent regulation of transcription by Rsd and 6S RNA

2016-06-10 | GSE74809 | GEO