Browse
Submit Data
Databases
API
Help

Dataset Information

0 Views

0 Connections

0 Citations

0 Reanalyses

0 Downloads

Omics score: 0

ABSTRACT: Genome assembly of the obligate heterozygous red clover Trifolium pratense

PROVIDER: PRJNA754186 | ENA |

REPOSITORIES: ENA

ACCESS DATA

Json Xml

Dataset's files

Source:

			Action	DRS
		Other
	JAIHMJ01.dat.gz	Other
	JAIHMJ01.fasta.gz	Fasta.gz
	JAIHMJ01.master.dat	Other
	SRR15433788_subreads.fastq.gz	Fastqsanger.gz

Items per page:

1 - 5 of 16

Similar Datasets

Trifolium pratense cultivar:Kenland

Project description:Red clover (Trifolium pratense) transcriptome

| PRJNA287846 | ENA

RNA-seq of two Trifolium pratense genotypes, Tripo and Lasang, from early to late developmental stages of flower development

Project description:Red clover (Trifolium pratense L.) is one of the most important legume forage species in temperate livestock agriculture. Tetraploid red clover cultivars are generally producing less seed than diploid cultivars. Improving the seed setting potential of tetraploid cultivars is necessary in order to utilize the high forage quality and environmentally sustainable nitrogen fixation of red clover. Two genotypes, one from cv.Tripo with weak seed setting and one from cv.Lasang with strong seed setting, were selected based on data from field experiments for transcriptome analysis of developing flower buds. De novo and reference based analyses of transcriptome assemblies were conducted to study the global transcriptome changes from early to late developmental stages of flower development of the two contrasting red clover genotypes. Transcript profiles, gene ontology enrichment and KEGG pathway analysis indicate that genes related to flower development, pollen pistil interactions, photosynthesis and embryo development are differentially expressed between the Tripo and Lasang genotypes. A significant number of genes related to pollination was overrepresented in Lasang, which might be a reason for its good seed setting ability. The candidate genes detected in this study might be used to develop molecular tools for breeding tetraploid red clover varieties with improved seed yield potentials.

2017-01-31 | E-MTAB-5117 | biostudies-arrayexpress

A proteome analysis of freezing tolerance in red clover (Trifolium pratense L.)

Project description:Improvement of freezing tolerance of red clover (Trifolium pratense L.) would increase its persistence under cold climate. In this study, we assessed the freezing tolerance and compared the proteome composition of non-acclimated and cold-acclimated plants of two initial cultivars of red clover: Endure (E-TF0) and Christie (C-TF0) and of populations issued from these cultivars after three (TF3) and four (TF4) cycles of phenotypic recurrent selection for superior freezing tolerance. Through this approach, we wanted to identify proteins that are associated with the improvement of freezing tolerance in red clover. Recurrent selection performed indoor is an effective approach to improve the freezing tolerance of red clover. Significant improvement of freezing tolerance by recurrent selection was associated with differential accumulation of a small number of cold-regulated proteins that may play an important role in the determination of the level of freezing tolerance.

2016-03-15 | PXD003689 | Pride

Trifolium pratense L. (red clover) draft genome

Project description:Assembly of red clover (Trifolium pratense L.) genome

| PRJEB9186 | ENA

Project description:Red clover Trifolium pratense high-quality genome

| PRJEB34003 | ENA

Comparative genomics of the heterozygous legume forage Trifolium pratense (red clover).

Project description:New Trifolium pratense annotated genome (Red clover)

| PRJEB55674 | ENA

Mass spectrometric identification of antimicrobial peptides from medicinal seeds

Project description:Traditional medicinal plants contain a variety of bioactive natural products including cysteine-rich (Cys-rich) antimicrobial peptides (AMPs). Cys-rich AMPs are often crosslinked by multiple disulfide bonds which increase their resistance to chemical and enzymatic degradation. However, this class of molecules is relatively underexplored. Herein, in silico analysis predicted 80 – 100 Cys-rich AMPs per species from three edible traditional medicinal plants: Linum usitatissimum (flax), Trifolium pratense (red clover), and Sesamum indicum (sesame). Proteomics analysis of seed peptide extracts revealed direct evidence for the translation of 3-10 Cys-rich AMPs per species including lipid transfer proteins, defensins, α-hairpinins, and snakins. Negative activity revealed by antibacterial screening highlights the importance of employing a multi-pronged approach for AMP discovery. Further, this study demonstrates that flax, red clover, and sesame are promising sources of further AMP discovery and characterization.

2022-02-16 | PXD029289 | Pride

Project description:Population structure and genetic diversity in red clover (Trifolium pratense L.) germplasm

| PRJEB30826 | ENA

Red clover (Trifolium pratense L.) extract inhibits ferroptotic cell death by modulating cellular iron homeostasis

Project description:Red clover (Trifolium pratense L.) extract inhibits ferroptotic cell death by modulating cellular iron homeostasis

| PRJNA913001 | ENA

Trifolium pratense

Project description:Trifolium pratense Genome sequencing and assembly

| PRJNA200547 | ENA