Lyngbya sp. CCAP 1446/10
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ABSTRACT:
PROVIDER: PRJNA755139 | ENA |
REPOSITORIES: ENA
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Project description:Anabaena sp. PCC 7938 strain:CCAP 1446/1C Genome sequencing and assembly
| PRJNA565438 | ENA
Project description:Anabaena sp. PCC 7938 strain:CCAP 1446/1C Genome sequencing and assembly
| PRJNA565441 | ENA
Project description:BACKGROUND: Lyngbya majuscula CCAP 1446/4 is a N2-fixing filamentous nonheterocystous strain that contains two NiFe-hydrogenases: an uptake (encoded by hupSL) and a bidirectional enzyme (encoded by hoxEFUYH). The biosynthesis/maturation of NiFe-hydrogenases is a complex process requiring several accessory proteins for e.g. for the incorporation of metals and ligands in the active center (large subunit), and the insertion of the FeS clusters (small subunit). The last step in the maturation of the large subunit is the cleavage of a C-terminal peptide from its precursor by a specific endopeptidase. Subsequently, the mature large and small subunits can assemble forming a functional enzyme. RESULTS: In this work we demonstrated that, in L. majuscula, the structural genes encoding the bidirectional hydrogenase are cotranscribed, and that hoxW (the gene encoding its putative specific endopeptidase) is in the same chromosomal region but transcribed from a different promoter. The gene encoding the putative specific uptake hydrogenase endopeptidase, hupW, can be cotranscribed with the structural genes but it has its own promoter. hoxH, hupL, hoxW and hupW transcription was followed in L. majuscula cells grown under N2-fixing and non-N2-fixing conditions over a 12 h light/12 h dark cycle. The transcription of hoxH, hoxW and hupW did not vary remarkably in the conditions tested, while the hupL transcript levels are significantly higher under N2-fixing conditions with a peak occurring in the transition between the light and the dark phase. Furthermore, the putative endopeptidases transcript levels, in particular hoxW, are lower than those of the respective hydrogenase structural genes. CONCLUSION: The data presented here indicate that in L. majuscula the genes encoding the putative hydrogenases specific endopeptidases, hoxW and hupW, are transcribed from their own promoters. Their transcript levels do not vary notably in the conditions tested, suggesting that HoxW and HupW are probably constantly present and available in the cells. These results, together with the fact that the putative endopeptidases transcript levels, in particular for hoxW, are lower than those of the structural genes, imply that the activity of the hydrogenases is mainly correlated to the transcription levels of the structural genes. The analysis of the promoter regions indicates that hupL and hupW might be under the control of different transcription factor(s), while both hoxH and xisH (hoxW) promoters could be under the control of LexA.
| S-EPMC2674450 | biostudies-literature
Project description:Mucor sp. NRRL 1446 Resequencing genome sequencing
| PRJNA677201 | ENA
Project description:This work presents the characterization of an uptake hydrogenase from a marine filamentous nonheterocystous cyanobacterium, Lyngbya majuscula CCAP 1446/4. The structural genes encoding the uptake hydrogenase (hupSL) were isolated and characterized, and regulatory sequences were identified upstream of hupS. In silico analysis highlighted various sets of long repetitive sequences within the hupSL intergenic region and downstream of hupL. The transcriptional regulator that operates global nitrogen control in cyanobacteria (NtcA) was shown to bind to the promoter region, indicating its involvement in the transcriptional regulation of hupSL. Under N2-fixing conditions and a 12-h light/12-h dark regime, H2 uptake activity was shown to follow a daily pattern with a clear maximum towards the end of the dark period, preceded by an increase in the transcript levels initiated in the end of the light phase. Novel antibodies directed against HupL of Lyngbya majuscula CCAP 1446/4 were used to monitor the protein levels throughout the 24-h period. The results suggest that protein turnover occurs, with degradation taking place during the light phase and de novo synthesis occurring during the dark phase, coinciding with the pattern of H2 uptake. Taking into account our results and the established correlation between the uptake hydrogenase activity and N2 fixation in cyanobacteria, it seems probable that both processes are confined to the dark period in aerobically grown cells of Lyngbya majuscula CCAP 1446/4.
| S-EPMC1183275 | biostudies-literature
Project description:Nostoc sp. CCAP 1453/38 Genome sequencing
| PRJNA266493 | ENA
Project description:Anabaena sp. CCAP 1446/1C isolate:PCC 7938 Genome sequencing and assembly
| PRJNA812045 | ENA
Project description:Xanthomonas sp. 10-10 Genome sequencing
| PRJNA1068113 | ENA