Browse
Submit Data
Databases
API
Help

Dataset Information

0 Views

0 Connections

0 Citations

0 Reanalyses

0 Downloads

Omics score: 0

ABSTRACT: Metagenomics analysis of Nymphicus hollandicus

PROVIDER: PRJNA756392 | ENA |

REPOSITORIES: ENA

ACCESS DATA

Json Xml

Dataset's files

Source:

			Action	DRS
	SRR15669261_1.fastq.gz	Fastqsanger.gz
	SRR15669261_2.fastq.gz	Fastqsanger.gz
	SRR15669262_1.fastq.gz	Fastqsanger.gz
	SRR15669262_2.fastq.gz	Fastqsanger.gz
	SRR15669263_1.fastq.gz	Fastqsanger.gz

Items per page:

1 - 5 of 10

Similar Datasets

Nymphicus hollandicus

Project description:Nymphicus hollandicus

| PRJNA479577 | ENA

Nymphicus hollandicus

Project description:Nymphicus hollandicus overview

| PRJNA479700 | ENA

Project description:Tissue-specific RNAseq of Nymphicus hollandicus (cockatiel)

| PRJNA1032113 | ENA

Nymphicus hollandicus isolate:NH10

Project description:Nymphicus hollandicus isolate:NH10 Genome sequencing and assembly

| PRJNA819251 | ENA

Comparative proteomic analysis in adult parrot and chicken plasma and cerebrospinal fluid identifies gene products involved in neurogenesis, neural cell differentiation and synaptic plasticity.

Project description:Cerebrospinal fluid (CSF) proteins regulate neurogenesis, homeostasis and participate in active signalling during neuroinflammation. Components of CSF are mostly blood-derived, but partially also secreted from the brain cells. While various birds may represent suitable models for the investigation of adult constitutive neurogenesis, proteomic studies of the avian CSF examined so far solely chicken embryos. On this basis, we explored the proteomic composition of CSF and plasma in adult parrots, budgerigar (Melopsittacus undulatus) and cockatiel (Nymphicus hollandicus) and chickens (Gallus gallus) using liquid chromatography–tandem mass spectrometry (nLC-MS/MS). To overcome the lack of a complete cockatiel genome information, we compared the MS/MS identification success rates after mapping all spectra from all three species against the reference proteomes of three model avian species: chicken, budgerigar and zebra finch. We show highest efficiency (8.8-4.7%) for the closest reference proteome, although part of the proteins (7.2-18%) were mapped only with other references. After filtering the selected datasets, we identified up to 746 proteins represented in the CSF and plasma of chicken, budgerigar and cockatiel. Enrichment analysis of the core proteome of these datasets revealed various metabolic and signalling pathways. Comparative analysis of CSF and plasma for each species then indicated clusters of proteins preferentially upregulated into CSF that were involved in neurogenesis, neural development and neural differentiation pathways. This study provides the first insight into the proteomics of adult avian CSF and plasma and brings novel molecular evidence supporting the adult neurogenesis in birds.

2021-05-18 | PXD021633 | Pride

Nitrolancea hollandica Lb strain:none

Project description:Nitrolancetus hollandicus Genome Sequencing

| PRJEA78953 | ENA

Geochip data of soil microbial community of biomes from three termperature zones

Project description:Here, we applied a microarray-based metagenomics technology termed GeoChip 5.0 to examined functional gene structure of microbes in three biomes, including boreal, temperate and tropical area.

2024-05-10 | GSE172195 | GEO

RNA-seq analysis of nasopharyngeal swabs from asymptomatic and mildly symptomatic COVID-19 patients

Project description:We used total RNA of nasopharyngeal swabs from COVID-19 patients to identify their gene expression profile. Multiple biological process were significantly enriched in either asymptomatic or mildly symptomatic patients. These significantly expressed genes were suggested to contribute to the severity of the disease. We also performed metagenomics analysis to identify differences in the microbiome profile of the two groups of patients.

2022-06-29 | GSE186651 | GEO

Project description:Metagenomics analysis

| PRJNA1028484 | ENA

MGA

Project description:Metagenomics analysis

| PRJEB24892 | ENA