Browse
Submit Data
Databases
API
Help

Dataset Information

0 Views

0 Connections

0 Citations

0 Reanalyses

0 Downloads

Omics score: 0

Genome-wide chromatin binding of Hdac2 in murine PDAC cells (ChIP-Seq)

ABSTRACT: Genome-wide chromatin binding of Hdac2 in murine PDAC cells (ChIP-Seq)

PROVIDER: PRJNA762060 | ENA |

REPOSITORIES: ENA

ACCESS DATA

Json Xml

Dataset's files

Source:

			Action	DRS
	SRR15832893.fastq.gz	Fastqsanger.gz
	SRR15832894.fastq.gz	Fastqsanger.gz
	SRR15832895.fastq.gz	Fastqsanger.gz
	SRR15832896.fastq.gz	Fastqsanger.gz
	SRR15832897.fastq.gz	Fastqsanger.gz

Items per page:

1 - 5 of 5

Similar Datasets

Genome-wide chromatin binding of Hdac2 in murine PDAC cells (ChIP-Seq)

Project description:Hdac2 ChIP-seq were used to determine epigenetic differences between Hdac2 knockout versus Hdac2 wildtype pancreatic cancer cells. DOI: 10.1158/0008-5472.can-20-3209

2021-11-11 | GSE183823 | GEO

ChIP-seq experiment analyzing binding of HDAC2 and HDAC3 to genomic loci in rat Neural Stem Cells

Project description:Binding of HDAC2 and HDAC3 was assayed using antibodies SC-7899x and SC-11417x examination of HDAC2 and HDAC3 binding in rat neural stem cells

2014-06-17 | E-GEOD-57232 | biostudies-arrayexpress

Genome-wide map of GATA6 DNA binding in human PDAC cells

Project description:By studying a mouse model, as well as human tumors samples and cell lines, we have revealed a tumor suppressive role for Gata6 in the pathogenesis of pancreatic ductal adenocarcinoma (PDAC). In order to understand the mechanism underlying such tumor suppressive function, we analyzed the genome-wide DNA-binding of GATA6 in a human PDAC cell line (PaTu8988S). GATA6 is found to bind the promoter of genes involved in the epithelial differentiation programme, as well as of genes involved in the mesenchymal programme. With this we describe a novel GATA6-dependent mechanism of regulation of EMT. Examination of GATA6 binding to the DNA in a human PDAC cell line

2015-02-03 | E-GEOD-47535 | biostudies-arrayexpress

ChIP-seq experiment analyzing binding of HDAC2 and HDAC3 to genomic loci in rat Neural Stem Cells

Project description:Binding of HDAC2 and HDAC3 was assayed using antibodies SC-7899x and SC-11417x

2014-06-17 | GSE57232 | GEO

Genome-wide mapping of binding of HDAC1/HDAC2 and H3K9/14Ac modification in control and Tet2/Tet3-deficient B cells

Project description:We report the genome-wide accumulation of HDAC1, HDAC2 and H3K9/14Ac in B cells. We found that the binding of HDAC1 and HDAC2 was observed mainly on proximal promoters, suggesting a redundant role of these HDACs in transcriptional regulation. This study provides a basis for the comprehensive understanding of Tet2/Tet3-HDACs-mediated B cell regulation.

2020-07-08 | GSE137666 | GEO

Genome-wide map of GATA6 DNA binding in human PDAC cells

2015-02-03 | GSE47535 | GEO

RNA-seq comparison of CD90- myCAFs and CD90+ myCAFs flow-sorted from murine PDAC tumors derived from the orthotopic transplantation of PDAC KPC T-LOH organoids

Project description:We investigated differences between CD90- myCAFs and CD90+ myCAFs flow-sorted from murine PDAC tumors derived from the orthotopic transplantation of PDAC KPC T-LOH organoids

2023-11-30 | GSE243828 | GEO

RNA-seq of sorted KPC Sf3b1-K700E murine PDAC cells

Project description:We established a mouse model of KrasG12D, Trp53-/- and Sf3b1-K700E murine pancreatic cancer to elucidate the impact of the SF3B1 mutation found in human PDAC on the KPC mouse model.

2022-06-07 | GSE203339 | GEO

HDAC in PDAC

Project description:Transcriptome analysis of murine Hdac2 knockout pancreatic tumor cells.

| PRJEB35204 | ENA

Hnf4a regulated transcriptome in murine PDAC autochthonous tumors [FFPE tumors]

Project description:Hnf4a regulated transcriptome in murine PDAC autochthonous tumors [FFPE tumors]

| PRJNA574924 | ENA