Browse
Submit Data
Databases
API
Help

Dataset Information

0 Views

0 Connections

0 Citations

0 Reanalyses

0 Downloads

Omics score: 0

Muscle from two pig breeds with varying muscularity

ABSTRACT: Muscle from two pig breeds with varying muscularity

PROVIDER: PRJNA767244 | ENA |

REPOSITORIES: ENA

ACCESS DATA

Json Xml

Dataset's files

Source:

			Action	DRS
	SRR16114468_1.fastq.gz	Fastqsanger.gz
	SRR16114468_2.fastq.gz	Fastqsanger.gz
	SRR16114469_1.fastq.gz	Fastqsanger.gz
	SRR16114469_2.fastq.gz	Fastqsanger.gz
	SRR16114470_1.fastq.gz	Fastqsanger.gz

Items per page:

1 - 5 of 12

Similar Datasets

Transcriptome analysis of muscle from two pig breeds with varying muscularity

Project description:Transcriptome analysis of muscle from two pig breeds with varying muscularity

| PRJNA767247 | ENA

MeDIP based methylome analysis of muscle from two pig breeds with varying muscularity

Project description:MeDIP based methylome analysis of muscle from two pig breeds with varying muscularity

| PRJNA767248 | ENA

MeDIP based methylome analysis of muscle from two pig breeds with varying muscularity

Project description:We report the application of methylated DNA immunopreciptation (MeDIP)-next generation sequencing for examining methylome in two different breeds of pigs. Two muscle samples from each animal/breed processed to isolated DNA. DNA was isolated from two muscle samples (one per breed) was used for methylated DNA immunoprecipitation (MeDIP). 5 methyl cytosine regions were immunoprecipitated and processed for next generation sequencing in Hiseq 2500 (Illumina). The pre-processed reads were mapped to the Sus scrofa genome v11.1 downloaded from UCSC (http://genome.ucsc.edu/) with Burrows–Wheeler alignment (BWA) (version 0.7.17). The MeDIP data generated was used for identification of differentially methylated regions (DMRs) across the chromosome between the breeds using Burrrows Eheeler Alignment (BWA version 0.7.17. Uniquely mapped reads were processed further with MEDIPS. A total of 1545 and 25 DMRs (P<0.1) were identified across the pig chromosome and mitochondrial DNA respectively.

2023-09-29 | GSE184969 | GEO

Transcriptome analysis of muscle from two pig breeds with varying muscularity

Project description:We report the application of next generation sequencing for examining muscle development in two different breeds of pigs (Hampshire and Mali). Muscle samples (n=2/breed) were subjected to RNA isolation, cDNA library preparation and sequencing.The transcriptome analysis shows significant differences in the expression pattern of genes associated with muscle development in Hampshire and Mali.

2023-09-29 | GSE184968 | GEO

ChIP-seq of embryonic muscle sample of two pig breeds

Project description:ChIP-seq of embryonic muscle sample of Landrace and Wuzhishan pig breeds from embryonic day 35 and 28 dpc were conducted using H3K4me3 and H3K27me3 antibody.

2019-09-27 | GSE119566 | GEO

Pig Longissimus muscle: comparison between Basque and Large White breeds

Project description:Transcriptional profiling of pig skeletal muscle comparing two divergent breeds: Large white (LW, conventional) and Basque (B, local, indigeneous).

2012-11-20 | GSE26614 | GEO

ChIP-seq of embryonic muscle sample of two pig breeds

Project description:ChIP-seq of embryonic muscle sample of two pig breeds

| PRJNA489607 | ENA

Pig Longissimus muscle: comparison between Basque and Large White breeds

Project description:Transcriptional profiling of pig skeletal muscle comparing two divergent breeds: Large white (LW, conventional) and Basque (B, local, indigeneous). Two-condition experiment, LW vs. B muscles. Biological replicates: 20 B and 20 LW. One replicate per array.

2012-11-20 | E-GEOD-26614 | biostudies-arrayexpress

Comparative transcriptome analysis reveals genes regulating myogenesis and adipogenesis among different pig breeds

Project description:We performed transcriptome analysis of the longissimus dorsi muscle of four pig breeds (L, LDPL, DPL, DLDPL). This study provides a reference for exploring transcriptome regulation mechanisms affecting muscle growth and development in different pig breeds.

2019-01-01 | GSE119368 | GEO

CGH analyses for the Chinese indigenous pig breeds and commercial pig breeds [Agilent]

Project description:Since CNVs play a vital role in genomic studies, it is an imperative need to develop a comprehensive, more accurate and higher resolution porcine CNV map with practical significance in follow-up CNV functional analyses To detect CNV of pigs, we performed high density aCGH data of diverse pig breeds in the framework of the pig draft genome sequence (Sscrofa10.2) 9 Chinese indigenous pig, one Chinese wild boar and 2 commercial pigs were detected using one pig of Duroc as reference. These 12 animals include 1 wild pig, 2 pigs each from Yorkshire and Landrace as the representatives of modern commercial breeds and 9 unrelated individuals selected from 6 Chinese indigenous breeds (2- Tibetan pig, 2- Diannan small-ear pig, 2-Meishan pig, 1- Min pig, 1-Daweizi pig, and 1-Rongchang pig).

2015-06-29 | E-GEOD-49299 | biostudies-arrayexpress

OmicsDI is part of the ELIXIR infrastructure

OmicsDI is an Elixir interoperability service. Learn more ›

Tweets

OmicsDI Databases

PRIDE
PeptideAtlas
MassIVE
JPOST Repository
Physiome Model Repository

EGA
EVA
ENA
LINCS
PAXDB
Cell Collective

MetaboLights
Metabolomics Workbench
MetabolomeExpress
GNPS
BioModels
FAIRDOMHub

ArrayExpress
dbGaP
ExpressionAtlas
GEO
NODE

Information

Databases
Help
API
Contact us
Code on GitHub
Terms of use
Submit Data