Browse
Submit Data
Databases
API
Help

Dataset Information

0 Views

0 Connections

0 Citations

0 Reanalyses

0 Downloads

Omics score: 0

ABSTRACT: Environmental metabarcoding of marine sediments with and without, PCR and eDNA removal

PROVIDER: PRJNA767767 | ENA |

REPOSITORIES: ENA

ACCESS DATA

Json Xml

Dataset's files

Source:

			Action	DRS
	SRR16156400_1.fastq.gz	Fastqsanger.gz
	SRR16156400_2.fastq.gz	Fastqsanger.gz
	SRR16156401_1.fastq.gz	Fastqsanger.gz
	SRR16156401_2.fastq.gz	Fastqsanger.gz
	SRR16156402_1.fastq.gz	Fastqsanger.gz

Items per page:

1 - 5 of 108

Similar Datasets

Towards functional profiling for eDNA based monitoring in coastal environments: a comparison of three approaches

Project description:Monitoring microbial communities can aid in understanding the state of these habitats. Environmental DNA (eDNA) techniques provide efficient and comprehensive monitoring by capturing broader diversity. Besides structural profiling, eDNA methods allow the study of functional profiles, encompassing the genes within the microbial community. In this study, three methodologies were compared for functional profiling of microbial communities in estuarine and coastal sites in the Bay of Biscay. The methodologies included inference from 16S metabarcoding data using Tax4Fun, GeoChip microarrays, and shotgun metagenomics.

2024-04-14 | E-MTAB-13075 | biostudies-arrayexpress

Biological effects of marine contaminated sediments on Sparus aurata juveniles

Project description:Chemical analysis of the compounds present in sediment, although informative, often is not indicative of the downstream biological effects that these contaminants exert on resident aquatic organisms. More direct molecular methods are needed to determine if marine life is affected by exposure to sediments. In this study, we used an aquatic multispecies microarray and q-PCR to investigate the effects on gene expression in juvenile sea bream (Sparus aurata) of two contaminated sediments defined as sediment 1 and 2 respectively, from marine areas in Northern Italy.

2011-01-01 | E-TABM-1146 | biostudies-arrayexpress

Project description:Marine fish eDNA metabarcoding

| PRJNA802546 | ENA

Project description:Marine sediments eDNA from CCFZ

| PRJNA899048 | ENA

Metaproteomics analyses of three chronically petroleum-polluted sites

Project description:Crude oil is the one of the most important natural assets of humankind, yet it is a major environmental pollutant, in particular, in marine environments. One of the largest crude oil polluted areas in the word is the semi-enclosed Mediterranean Sea, where the metabolic potential of indigenous populations towards the chronic pollution at a large scale is yet to be defined, particularly in anaerobic and micro-anaerobic marine sites. Here, we provided a novel insight into the active microbial metabolism in sediments from three environments along the coastline of Italy. Microbial proteomes exhibited prevalence in anaerobic metabolism, not related to the biodegradation directly, suggesting the strong limitation by oxygen induced by the carbon overload. They also point at previously unrecognized metabolic coupling between methane and methanol utilizers as well as sulfur reducers in marine petroleum polluted sediments.

2015-07-24 | PXD001490 | Pride

Enhancing environmental DNA metabarcoding from marine ecosystems: Impact of filter type, storage method, and storage time on assessment of fish alpha- and beta-diversity

Project description:marine eDNA metabarcoding: storage and filter effects

| PRJEB71101 | ENA

marine sediment metagenome

Project description:marine sediments Targeted loci environmental

| PRJNA305190 | ENA

Project description:Marine biomonitoring: predicting biotic indices from eDNA metabarcoding

| PRJNA376130 | ENA

Project description:Environmental DNA (eDNA) metabarcoding reveals strong discrimination among diverse marine habitats connected by water movement.

| PRJNA498734 | ENA

Project description:Fish eDNA metabarcoding

| PRJNA1049655 | ENA