Browse
Submit Data
Databases
API
Help

Dataset Information

0 Views

0 Connections

0 Citations

0 Reanalyses

0 Downloads

Omics score: 0

PacBio SMRT-seq of wild-type, ∆metJ, and ∆yhdJ Salmonella enterica serovar Typhimurium (14028s)

ABSTRACT: PacBio SMRT-seq of wild-type, ∆metJ, and ∆yhdJ Salmonella enterica serovar Typhimurium (14028s)

PROVIDER: PRJNA769288 | ENA |

REPOSITORIES: ENA

ACCESS DATA

Json Xml

Dataset's files

Source:

			Action	DRS
	SRR16230507_subreads.fastq.gz	Fastqsanger.gz
	SRR16230508_subreads.fastq.gz	Fastqsanger.gz
	SRR16230509_subreads.fastq.gz	Fastqsanger.gz
	SRR16230510_subreads.fastq.gz	Fastqsanger.gz

Items per page:

1 - 4 of 4

Similar Datasets

PacBio SMRT-seq of wild-type, ∆metJ, and ∆yhdJ Salmonella enterica serovar Typhimurium (14028s)

Project description:PacBio SMRT-seq of wild-type, ∆metJ, and ∆yhdJ Salmonella enterica serovar Typhimurium grown under SPI-1-inducing condition.

2021-11-12 | GSE185501 | GEO

PacBio SMRT-seq of wild-type, ∆metJ, and ∆dam Salmonella enterica serovar Typhimurium (14028s)

Project description:PacBio SMRT-seq of wild-type, ∆metJ, and ∆dam Salmonella enterica serovar Typhimurium grown under SPI-1-inducing and SPI-2-inducing conditions.

2021-11-12 | GSE185578 | GEO

PacBio SMRT-seq of wild-type, ∆metJ, and ∆dam Salmonella enterica serovar Typhimurium (14028s)

Project description:PacBio SMRT-seq of wild-type, ∆metJ, and ∆dam Salmonella enterica serovar Typhimurium (14028s)

| PRJNA769701 | ENA

Salmonella enterica serovar Typhimurium strain 14028s transcriptome response to lettuce media

Project description:Summary: Salmonella enterica serovar Typhimurium strain 14028s transcriptome response to lettuce medium (LM) and lettuce root exudates (LX) to minimal medium (MM). Purpose: Salmonella mRNA profile, when grown in different media was compared to minimal medium to reveal environment specific transcriptional changes. Methods: mRNA profiles were generated using Illumina HiSeq in triplicates. The sequences were analysed using Bowtie2 followed by Cufflinks.

2019-06-10 | GSE123152 | GEO

Salmonella enterica serovar Typhimurium strain 14028s transcriptome response to tomato media

Project description:Summary: Salmonella enterica serovar Typhimurium strain 14028s transcriptome response to tomato medium (TM) and tomato root exudates (TX) compared to minimal medium (MM). Purpose: Salmonella mRNA profile, when grown in different media was compared to minimal medium to reveal environment specific transcriptional changes. Methods: mRNA profiles were generated using Illumina HiSeq in triplicates. The sequences were analysed using Bowtie2 followed by Cufflinks.

2020-03-31 | GSE132634 | GEO

Salmonella enterica serovar Typhimurium strain 14028s transcriptome response to soil media

Project description:Summary: Salmonella enterica serovar Typhimurium strain 14028s transcriptome response to DS soil suspension (DS) and suspension of autoclaved DS soil (DA) compared to minimal medium (MM). Purpose: Salmonella mRNA profile, when grown in different media was compared to minimal medium to reveal environment specific transcriptional changes. Methods: mRNA profiles were generated using Illumina HiSeq in triplicates. The sequences were analysed using Bowtie2 followed by Cufflinks.

2020-03-31 | GSE132633 | GEO

Salmonella 14028s AraC ChIP-Seq

Project description:We mapped the genome-wide binding of C-terminally FLAG-tagged AraC in S. enterica subsp. enterica serovar Typhimurium strain 14028s using ChIP coupled with deep sequencing (ChIP-seq). We identified five putative target loci for AraC: upstream of araB/araC, araE, araJ, STM14_0178, and within sseD.

2013-10-09 | E-MTAB-1915 | biostudies-arrayexpress

The nsrR regulon in Salmonella Typhimurium 14028s

Project description:In this study, we have defined the NsrR regulon in Salmonella enterica sv. Typhimurium 14028s using a transcriptional microarray. Wild-type and nsrR mutant S. Typhimurium were grown aerobically to early log-phase (OD600~0.5) at 37C in LB medium. Total RNA was isolated from three independent cultures of both strains and interrogated on a PCR product array representing almost all ORFs.

2012-11-21 | GSE32585 | GEO

14028s:rpoH_heat_shock_37C_RNA

Project description:Gene expression in Salmonella enterica sv Typhimurium 14028s rpoH mutant strain IB314 after heat shock to 37C Keywords: time-course

2004-05-10 | GSE809 | GEO

RNA-seq of wild-type and ∆yhdJ Salmonella enterica serovar Typhimurium (14028s)

Project description:An RNA-seq analysis of wild-type Salmonella enterica serovar Typhimurium and ∆ydhJ isogenic mutant grown under SPI-1-inducing and SPI-2-inducing conditions.

2021-11-12 | GSE185073 | GEO

OmicsDI is part of the ELIXIR infrastructure

OmicsDI is an Elixir interoperability service. Learn more ›

Tweets

OmicsDI Databases

PRIDE
PeptideAtlas
MassIVE
JPOST Repository
Physiome Model Repository

EGA
EVA
ENA
LINCS
PAXDB
Cell Collective

MetaboLights
Metabolomics Workbench
MetabolomeExpress
GNPS
BioModels
FAIRDOMHub

ArrayExpress
dbGaP
ExpressionAtlas
GEO
NODE

Information

Databases
Help
API
Contact us
Code on GitHub
Terms of use
Submit Data