Browse
Submit Data
Databases
API
Help

Dataset Information

0 Views

0 Connections

0 Citations

0 Reanalyses

0 Downloads

Omics score: 0

RNA sequencing of tomato seedlings infected with Fusarium responding to an Artemissia Absinthium essential oil

ABSTRACT: RNA sequencing of tomato seedlings infected with Fusarium responding to an Artemissia Absinthium essential oil

PROVIDER: PRJNA775969 | ENA |

REPOSITORIES: ENA

ACCESS DATA

Json Xml

Similar Datasets

RNA sequencing of tomato seedlings infected with Fusarium responding to an Artemissia Absinthium essential oil

Project description:Tomato seedlings with coated seeds of 12days responding to an Artemissia Absinthium essential oil shows increased tolarance to Fusarium

2022-03-25 | GSE186754 | GEO

Colonization of tomato seedlings by Fusarium incarnatum strain K23 establishes a different host response to salt stress

Project description:The Fusarium incarnatum strain K23, originally isolated from a habit-adapted wild plant Thapsia species, colonized the roots and shoots of tomato seedlings and protected them against salt stress. Comparison of expression and metabolite profile changes uncovered that the fungus completely reprogramed the tomato response to salt stress. Barely any overlap was observed among the genes and metabolites which are regulated by salt stress in uncolonized and colonized tomato seedlings. In colonized seedlings exposed to salt stress, less stress- related genes are activated than in un-colonized seedlings. Furthermore, K23 produced gibberellin and gibberellin-responsive genes were detected in all RNA samples. Our analysis demonstrates that K23 colonisation completely alters the salt-responsive gene and metabolite profiles in tomato seedlings.

2024-11-30 | GSE255960 | GEO

Nitrogen-regulated genes in Fusarium fujikuroi

Project description:Genome-wide search for AreA-dependent and -independent nitrogen-regulated genes in Fusarium fujikuroi by cross-species hybridization with F. verticillioides microarrays. Keywords: glutamine treatmet Compare expression of genes of Fusarium fujikuroi wild-type and areA mutant strains responding to nitrogen limitation or sufficiency.

2010-05-15 | E-GEOD-10692 | biostudies-arrayexpress

Transcription profiling of specific organs of wheat spikes in response to Fusarium graminearum inoculation

Project description:Organ specific microarray analysis were performed to identify genes responding to Fusarium graminearum inoculation in specific organs of wheat spikes.

2007-04-25 | E-TABM-97 | biostudies-arrayexpress

Effects of Neolamarckia cadamba essential Oil on microbial transcription

Project description:In order to explore the bacteriostatic mechanism of Neolamarckia cadamba essential oil, the effect of Neolamarckia cadamba essential oil on microbial transcription in logarithmic growth phase was determined.

2023-09-13 | GSE241080 | GEO

Transcriptomic analysis of Col and arf7 responding to auxin in hypocotyl

Project description:The goal of this study is to clarify the function of ARF7 in the pathway of auxin inducing the process responding to gravity in hypocotyl. We isolated total RNA from the hypocotyls of 4-day-old Col-0 and arf7 seedlings that were grown in the darkness. New genes act downstream of ARF7 after responding to auxin treatment, responding to gravity, are discovered.

2019-08-30 | GSE136635 | GEO

Transcriptomic analysis of Col responding to aluminum

Project description:Our objective is to study root development under aluminum stress. We isolated total RNA from the roots of 7-day-old Col-0 seedlings. New genes after responding to aluminum treatment, during the root development, are discovered.

2022-02-18 | GSE189946 | GEO

Tomato xylem proteome composition following infection by Fusarium oxysporum

Project description:The influence of during colonization by Fusarium oxysporum f. sp. Lycopersici secreted effector proteins on the proteome of the xylem sap of tomato plants was investigated using a label-free quantitative proteomics approach. A comparison was made between plants inoculated with either a mock control, a non-effector knockout control, Fusarium oxysporum Fol007 wildtype and four Fol007 single effector protein knockout strains. Specific effects on the relative abundance of certain proteins of the xylem sap occurred for the different knockout strains next to a core set of 24 differentially accumulated proteins which may provide insights into the mechanisms of promoting infection for each of the tested effector proteins.

2015-10-26 | PXD003010 | Pride

Characterization of the transcriptome of the low oil 1 (loo1) mutant

Project description:Gene expression profiles in 15 day old low oil 1 (loo1) mutant and the wild type A15 seedlings were compared. Keywords: Comparison and loo1 and wild type seedling transcriptomes

2009-04-12 | GSE7522 | GEO

Transcriptomic analysis of Col,arf2-7,stop1 responding to NAA.

Project description:Our objective is to study root stem cell niche. We isolated total RNA from the roots tips of 5-day-old Col-0,arf2-7 and stop1 seedlings. New genes after responding to NAA treatment, during the root development, are discovered.

2023-12-04 | GSE229236 | GEO

OmicsDI is part of the ELIXIR infrastructure

OmicsDI is an Elixir interoperability service. Learn more ›

Tweets

OmicsDI Databases

PRIDE
PeptideAtlas
MassIVE
JPOST Repository
Physiome Model Repository

EGA
EVA
ENA
LINCS
PAXDB
Cell Collective

MetaboLights
Metabolomics Workbench
MetabolomeExpress
GNPS
BioModels
FAIRDOMHub

ArrayExpress
dbGaP
ExpressionAtlas
GEO
NODE

Information

Databases
Help
API
Contact us
Code on GitHub
Terms of use
Submit Data