Browse
Submit Data
Databases
API
Help

Dataset Information

0 Views

0 Connections

0 Citations

0 Reanalyses

0 Downloads

Omics score: 0

Zea mays

ABSTRACT: Transcriptome-wide association and prediction for carotenoids and tocochromanols in fresh sweet corn kernels

PROVIDER: PRJNA782659 | ENA |

REPOSITORIES: ENA

ACCESS DATA

Json Xml

Dataset's files

Source:

			Action	DRS
	SRR17028300.fastq.gz	Fastqsanger.gz
	SRR17028400.fastq.gz	Fastqsanger.gz
	SRR17028500.fastq.gz	Fastqsanger.gz
	SRR17028600.fastq.gz	Fastqsanger.gz
	SRR17028700.fastq.gz	Fastqsanger.gz

Items per page:

1 - 5 of 448

Similar Datasets

Zea mays

Project description:transcriptome Analysis of sweet corn

| PRJNA1058417 | ENA

Zea mays

Project description:Sweet corn: low vs. high plant density

| PRJNA294055 | ENA

Zea mays

Project description:Sweet corn: low- vs. high-yielding hybrids

| PRJNA296961 | ENA

Peroxidase B6T173 (ZmPrx35) from insect-resistant maize (Zea mays, p84C3) kernels

Project description:Peroxidase (POD) activity was found to be positively correlated with insect resistance in maize kernels. Thus, we purified active PODs from (Zea mays, p84C3) kernels and subjected to LC-MS/MS analyses. To verify the identified putative plant PODs, we produced them by recombinant expression in E. coli. Whereas B4FFK9 did not display in vitro activity, B6T173 (ZmPrx35) was active and also exhibits a heme cofactor. B6T173 accounts for about 80% of the POD activity in the kernel, according to densitometric evaluation.

2015-08-21 | PXD002166 | Pride

Zea mays Transcriptome or Gene expression

Project description:We explored the gene expression profiles of developing maize kernel by RNA sequencing. Our purpose was to explore the sequence diversity across the inbred lines, especially in the gene regions, and to discover the gene regulatory networks employed in immature maize kernels.

2013-12-10 | E-MTAB-4239 | biostudies-arrayexpress

Overexpression of ZmSUS1 gene alters the content and composition of endosperm starch in maize (Zea mays L.)

Project description:Cereal crops accumulate starch in seeds as an energy reserve. Sucrose synthase (SuSy) plays an important role in grain starch synthesis. In this study, ZmSUS1 was transformed into maize inbred line KN5585, and transgenic plants were obtained. Compared with the control, the content and activity of SuSy were significantly increased, the amylose content in mature seeds of transgenic maize increased by 41.1-69.2%, the total starch content increased by 5.0-13.5%, The 100-grain weight increased by 19.0-26.2% and the average diameter of starch granules increased by 10.8-17.2%. These results indicated that overexpression of ZmSUS1 can significantly improve the traits of maize kernels and obtain new lines with high amylose content. It was also found that ZmSUS1 may increase the amylose content by regulating the expression of Shrunken2 (Sh2) and Brittle2 (Bt2) which encodes endosperm ADP-glucose pyrophosphorylase (AGPase) size subunits, and the expression of Granule bound starchsynthase1 (GBSS1) and Starch synthase1 (SS1) which encodes starch synthase. This study proved the important role of ZmSUS1 in maize starch synthesis, and provided a new technology strategy for improving corn starch content and yield.

2022-09-07 | GSE212465 | GEO

Zea mays Transcriptome or Gene expression

Project description:In this study a transcriptomic approach (RNA-sequencing) was utilized to elucidate molecular responses of maize (Zea mays L.) primary roots of the inbred line B73 to water deficit to gain a better understanding of the mechanisms underlying drought tolerance. Kernels of the maize inbred line B73 were germinated in paper rolls soaked with distilled water until seedlings had a primary root length of 2 to 4 cm. For mild and severe water deficit conditions, seedlings were transferred to PEG8000 solution with water potentials of -0.2 MPa and -0.8 MPa, respectively. Water deficit treatment was applied for 6 h and 24 h. Each treatment was performed in four biological replicates each consisting of 10 roots.

2014-05-03 | E-MTAB-4325 | biostudies-arrayexpress

Zea mays Variation

Project description:Profiling transcription levels across many parental inbreds from the maize nested association mapping population.

2013-01-30 | E-MTAB-4328 | biostudies-arrayexpress

Zea mays subsp. mays Transcriptome or Gene expression

Project description:Drought represents a major constraint on maize production worldwide. Understanding the genetic basis for natural variation in drought tolerance of maize may facilitate efforts to improve this trait in cultivated germplasm. Here, using a genome-wide association study, we show that a miniature inverted-repeat transposable element (MITE) inserted in the promoter of a NAC gene (ZmNAC111) is significantly associated with natural variation in maize drought tolerance. For maize RNA-seq analysis, pooled tissues from three, eight-day-old maize seedlings were collected from transgenic and wild-type plants, prior to or after 2-hour dehydration, to conduct the RNA-seq analysis.

2015-03-29 | E-MTAB-4246 | biostudies-arrayexpress

Single nucleotide polymorphism (SNP) markers for genetic diversity and population structure study in Brazilian Maize (Zea mays L.) germplasm

Project description:671 Inbred lines of Brazilian tropical corn germplasm composed of field corn, sweet corn, and popcorn from the Plant Breeding Program at Universidade Estadual de Maringa- PGM Maringa

2024-02-23 | PRJEB72805 | EVA

OmicsDI is part of the ELIXIR infrastructure

OmicsDI is an Elixir interoperability service. Learn more ›

Tweets

OmicsDI Databases

PRIDE
PeptideAtlas
MassIVE
JPOST Repository
Physiome Model Repository

EGA
EVA
ENA
LINCS
PAXDB
Cell Collective

MetaboLights
Metabolomics Workbench
MetabolomeExpress
GNPS
BioModels
FAIRDOMHub

ArrayExpress
dbGaP
ExpressionAtlas
GEO
NODE

Information

Databases
Help
API
Contact us
Code on GitHub
Terms of use
Submit Data