Browse
Submit Data
Databases
API
Help

Dataset Information

0 Views

0 Connections

0 Citations

0 Reanalyses

0 Downloads

Omics score: 0

Pseudomonas protegens CHA0

ABSTRACT: Pseudomonas protegens CHA0 Genome sequencing

PROVIDER: PRJNA78307 | ENA |

REPOSITORIES: ENA

ACCESS DATA

Json Xml

Dataset's files

Source:

			Action	DRS
	GCA_000397205.1_sequence_report.txt	Txt

Items per page:

1 - 1 of 1

Similar Datasets

Pseudomonas protegens CHA0

Project description:Pseudomonas protegens CHA0

| PRJEB28440 | ENA

Characterization of DkaiC mutants of Pseudomonas putida KT2440/2 and Pseudomonas protegens CHA0

Project description:KaiC is the central cog of the circadian clock in Cyanobacteria. Close homologs of this protein are widespread among bacteria not known to have a circadian physiology. The function, interaction network, and mechanism of action of these KaiC homologs are still largely unknown. Here, we focus on KaiC homologs found in environmental Pseudomonas species. We characterize experimentally the only KaiC homolog present in Pseudomonas putida KT2440 and Pseudomonas protegens CHA0. Through phenotypic assays and transcriptomics, we show that KaiC is involved in osmotic and oxidative stress resistance in P. putida and in biofilm production in both P. putida and P. protegens.

2023-01-04 | GSE221044 | GEO

Pseudomonas protegens strain:CHA0

Project description:Pseudomonas protegens CHA0 genome sequencing

| PRJNA958340 | ENA

Determination of ErfA regulon by DAP-seq in several Pseudomonas species

Project description:ErfA is a transcription factor of Pseudomonas aeruginosa. We here define the genome-wide binding sites of ErfA by DAP-seq in Pseudomonas aeruginosa PAO1 and IHMA87, Pseudomonas chlororaphis PA23, Pseudomonas protegens CHA0 and Pseudomonas putida KT2440.

2019-12-20 | GSE137648 | GEO

Characterization of DkaiC mutants of Pseudomonas putida KT2440/2 and Pseudomonas protegens CHA0

Project description:Characterization of DkaiC mutants of Pseudomonas putida KT2440/2 and Pseudomonas protegens CHA0

| PRJNA912661 | ENA

Pseudomonas protegens strain:CHA0-GFP

Project description:Evolutionary analysis of Pseudomonas protegens on the plant

| PRJNA473919 | ENA

Comparison of transcriptomic profiles of Pseudomonas protegens H78 and its hfq mutant (H78Δhfq)

Project description:Transcriptomic profiles of Pseudomonas protegens H78 and its hfq mutant, which were grown to the late exponential phase (OD600 = 5.0 to 6.0) in the KMB media at 28 °C, were assessed by deep sequencing (RNA-seq) on Illumina HiSeq 2500.

2021-05-17 | GSE141556 | GEO

The effect of zinc limitation on transcriptome expression in Pseudomonas protegens Pf-5

Project description:Transcriptomic profiling of Pseudomonas protegens Pf-5 comparing zinc-limited culture against zinc-amended culture in M9 minimal media

2011-10-13 | GSE32921 | GEO

Comparison of transcriptomic profiles of Pseudomonas protegens H78 and its rpoN-deleted mutant (H78ΔrpoN)

Project description:Transcriptomic profiles of Pseudomonas protegens H78 and its rpoN-deleted mutant (H78ΔrpoN), which were grown to the late exponential phase (OD600 = 4.0 to 5.0) in the KMB media at 28 °C, were assessed by deep sequencing (RNA-seq) on BGISEQ-500 (illumina).

2018-09-25 | GSE112907 | GEO

Comparison of transcriptomic profiles of Pseudomonas protegens H78 and its crc-deleted mutant (H78Δcrc)

Project description:Transcriptomic profiles of Pseudomonas protegens H78 and its crc-deleted mutant (H78Δcrc), which were grown to the late exponential phase (OD600 = 5.0 to 6.0) in the KMB media at 28 °C, were assessed by deep sequencing (RNA-seq) on Illumina HiSeq 2500.

2021-05-17 | GSE141557 | GEO

OmicsDI is part of the ELIXIR infrastructure

OmicsDI is an Elixir interoperability service. Learn more ›

Tweets

OmicsDI Databases

PRIDE
PeptideAtlas
MassIVE
JPOST Repository
Physiome Model Repository

EGA
EVA
ENA
LINCS
PAXDB
Cell Collective

MetaboLights
Metabolomics Workbench
MetabolomeExpress
GNPS
BioModels
FAIRDOMHub

ArrayExpress
dbGaP
ExpressionAtlas
GEO
NODE

Information

Databases
Help
API
Contact us
Code on GitHub
Terms of use
Submit Data