Browse
Submit Data
Databases
API
Help

Dataset Information

0 Views

0 Connections

0 Citations

0 Reanalyses

0 Downloads

Omics score: 0

ABSTRACT: Whole-genome sequencing of Penicillium roqueforti

PROVIDER: PRJNA787443 | ENA |

REPOSITORIES: ENA

ACCESS DATA

Json Xml

Dataset's files

Source:

			Action	DRS
	SRR17178875_1.fastq.gz	Fastqsanger.gz
	SRR17178876_1.fastq.gz	Fastqsanger.gz
	SRR17178877_1.fastq.gz	Fastqsanger.gz
	SRR17211200_1.fastq.gz	Fastqsanger.gz
	SRR17211200_2.fastq.gz	Fastqsanger.gz

Items per page:

1 - 5 of 71

Similar Datasets

Impact of maturation and growth temperature on transcription profiles of Penicillium roqueforti conidia

Project description:Purpose: The goal of this study is to compare differences between Penicillium roqueforti conidia from various conditions shown to affect heat-resistance to identify genes possibly related to heat-resistance using RNA-seq. Methods: mRNA from Penicillium roqueforti conidia produced at different temperatures (15C, 25C or 30C) and different cultivation times (3, 5, 7 or 10 days) was extracted, in triplicate, and sequenced with Illumina NextSeq500. The sequence reads that passed quality filters were analyzed using Hisat2 followed by Cufflinks. Results: we mapped about 19 million sequence reads per sample to the Penicillium roqueforti genome (build LCP96 04111) and identified 9723 transcripts in the conidia. Data analysis revealed a subset of 33 genes showing increased expression in culture conditions that increase heat-resistance. Conclusions: Our study generated insight into multiple genes that are likely involved in the heat-resistance of Penicillium roqueforti.

2020-04-24 | GSE149235 | GEO

Penicillium roqueforti

Project description:Penicillium roqueforti Genome sequencing

| PRJNA1079247 | ENA

Penicillium roqueforti

Project description:Genome sequencing of Penicillium roqueforti

| PRJDB12667 | ENA

Penicillium roqueforti

Project description:Penicillium roqueforti overview

| PRJNA240910 | ENA

ProqFM164

Project description:Penicillium roqueforti FM164 annotation

| PRJEB4023 | ENA

A multicenter translational biomarker phase II trial of regorafenib in patients with non-resectable pretreated colorectal cancer.

Project description:Primary objectives: The primary objective is to investigate circulating tumor DNA (ctDNA) via deep sequencing for mutation detection and by whole genome sequencing for copy number analyses before start (baseline) with regorafenib and at defined time points during administration of regorafenib for treatment efficacy in colorectal cancer patients in terms of overall survival (OS). Primary endpoints: circulating tumor DNA (ctDNA) via deep sequencing for mutation detection and by whole genome sequencing for copy number analyses before start (baseline) with regorafenib and at defined time points during administration of regorafenib for treatment efficacy in colorectal cancer patients in terms of overall survival (OS).

| 2533916 | ecrin-mdr-crc

Penicillium roqueforti

Project description:NBRP: Genome sequencing of Penicillium roqueforti JCM 22842

| PRJDB3665 | ENA

Penicillium roqueforti strain:ITEM 16728 | isolate:ITEM 16728

Project description:Penicillium roqueforti ITEM 16728 Minimal Draft genome sequencing

| PRJNA1080863 | ENA

Penicillium roqueforti strain:ITEM 16744 | isolate:ITEM 16744

Project description:Penicillium roqueforti ITEM 16744 Minimal Draft genome sequencing

| PRJNA1080864 | ENA

Population genomics of Penicillium roqueforti

Project description:Population genomics of Penicillium roqueforti