Browse
Submit Data
Databases
API
Help

Dataset Information

0 Views

0 Connections

0 Citations

0 Reanalyses

0 Downloads

Omics score: 0

H3K27ac ChIP-seq for multiple primary samples, normal tonsil samples and cell lines

ABSTRACT: H3K27ac ChIP-seq for multiple primary samples, normal tonsil samples and cell lines

PROVIDER: PRJNA788942 | ENA |

REPOSITORIES: ENA

ACCESS DATA

Json Xml

Dataset's files

Source:

			Action	DRS
	SRR17259779.fastq.gz	Fastqsanger.gz
	SRR17259780.fastq.gz	Fastqsanger.gz
	SRR17259781.fastq.gz	Fastqsanger.gz
	SRR17259782.fastq.gz	Fastqsanger.gz
	SRR17259783.fastq.gz	Fastqsanger.gz

Items per page:

1 - 5 of 20

Similar Datasets

H3K27ac ChIP-seq for multiple primary samples, normal tonsil samples and cell lines

Project description:ChIP-seq analysis was performed in primary NKTL (Natural killer T-cell lymphoma) samples, normal tonsil samples and 2 cell lines to analyze acetylation of histone H3K27ac.

2021-12-17 | GSE190922 | GEO

HNSCC samples vs. normal tonsil samples: reference design

2009-01-22 | GSE13398 | GEO

HNSCC samples vs. normal tonsil samples: self-self hybridization design

2009-01-22 | GSE13397 | GEO

HNSCC samples vs. normal tonsil samples: reference design

Project description:transcription profiling of human head and neck squamous cell carcinoma (HNSCC) samples vs. normal tonsil samples using a two-color reference design experimental setting. Used to identify differentially expressed genes in tumor/normal samples, and compare the result to that of the same samples using the self-self hybridization experimental setting. Keywords: tumor/normal comparison 8 HNSCC tumor samples and 8 normal tonsil samples. One sample per array. Two-color reference design with a common reference sample (a modified version of the Stratagene Human Universal Reference) on each array.

2010-05-06 | E-GEOD-13398 | biostudies-arrayexpress

HNSCC samples vs. normal tonsil samples: self-self hybridization design

Project description:transcription profiling of human head and neck squamous cell carcinoma (HNSCC) samples vs. normal tonsil samples using a self-self hybridization experimental design on two-color arrays. Used to identify differentially expressed genes in tumor/normal samples, and compare the result to that of the same samples using the reference design experimental setting. Keywords: tumor/normal comparison 8 HNSCC tumor samples and 8 normal tonsil samples. Each was profiled using a self-self hybridization design, where two aliquots of the same sample were labeled with two different dyes (cy3 and cy5) and hybridize to the same array.

2010-05-06 | E-GEOD-13397 | biostudies-arrayexpress

H3K27ac ChIP-seq for primary multiple myeloma patients’ samples (MM1-MM10)

Project description:ChIP-seq analysis was performed in primary Multiple Myeloma patients’ samples to analyze acetylation of histone H3K27ac.

2021-02-16 | GSE145891 | GEO

Tonsil cancer compared with normal tonsil tissue

Project description:Tonsil cancer compared with normal tonsil tissue

| PRJNA306762 | ENA

Transcription profiling of human head and neck squamous cell carcinoma (HNSCC) samples vs. normal tonsil samples

Project description:This SuperSeries is composed of the following subset Series: GSE13397: HNSCC samples vs. normal tonsil samples: self-self hybridization design GSE13398: HNSCC samples vs. normal tonsil samples: reference design Refer to individual Series

2009-01-21 | E-GEOD-13399 | biostudies-arrayexpress

Tonsil cancer compared with normal tonsil tissue

Project description:To investigate miRNA expression in human tonsil squamous cell carcinoma (SCC) compared to normal tonsil tissue. Two colour LNA Exiqon array. MicroRNAs were labeled at 3'-end with a P-CU-C3-Cy3 RNA linker. A mixture of 371 synthetic DNA reference oligonucleotides containing complementary sequences to all LNA probes was randomly labeled using the ULYSIS labeling kit.

2015-12-23 | GSE75630 | GEO

RNA-seq analysis comparing primary NKTL sample over tonsil control

Project description:RNA-seq analysis was performed in primary NKTL (Natural killer T-cell lymphoma) samples and healthy tonsil samples to analyze gene expression changes in lymphoma sample.

2021-12-17 | GSE190924 | GEO

OmicsDI is part of the ELIXIR infrastructure

OmicsDI is an Elixir interoperability service. Learn more ›

Tweets

OmicsDI Databases

PRIDE
PeptideAtlas
MassIVE
JPOST Repository
Physiome Model Repository

EGA
EVA
ENA
LINCS
PAXDB
Cell Collective

MetaboLights
Metabolomics Workbench
MetabolomeExpress
GNPS
BioModels
FAIRDOMHub

ArrayExpress
dbGaP
ExpressionAtlas
GEO
NODE

Information

Databases
Help
API
Contact us
Code on GitHub
Terms of use
Submit Data