Browse
Submit Data
Databases
API
Help

Dataset Information

0 Views

0 Connections

0 Citations

0 Reanalyses

0 Downloads

Omics score: 0

Oceanic epipelagic environment metagenomes(microbiomes)

ABSTRACT: Kuroshio region oceanic epipelagic environment metagenomes (bacterioplankton)

PROVIDER: PRJNA798158 | ENA |

REPOSITORIES: ENA

ACCESS DATA

Json Xml

Dataset's files

Source:

			Action	DRS
	SRR17650200_1.fastq.gz	Fastqsanger.gz
	SRR17650200_2.fastq.gz	Fastqsanger.gz
	SRR17650201_1.fastq.gz	Fastqsanger.gz
	SRR17650201_2.fastq.gz	Fastqsanger.gz
	SRR17650202_1.fastq.gz	Fastqsanger.gz

Items per page:

1 - 5 of 118

Similar Datasets

marine water metagenome

Project description:Kuroshio region oceanic epipelagic environment metagenomes (nanoeukaryotes)

| PRJNA1023380 | ENA

Project description:Kuroshio Region Shotgun Metagenomes

| PRJNA1089822 | ENA

metagenomes (microbiomes)

Project description:metagenomes (microbiomes) Raw sequence reads

| PRJNA870941 | ENA

oceanic eddies

Project description:oceanic eddies Metagenome

| PRJNA658878 | ENA

Lake Baikal Metagenomes

Project description:Lake Baikal Metagenomes obtained from epipelagic, mesopelagic and bathypelagic zones in winter and summer.

| PRJEB37526 | ENA

metagenomes (microbiomes) Raw sequence reads

Project description:metagenomes (microbiomes) Raw sequence reads Raw sequence reads

| PRJNA1000184 | ENA

metagenomes (microbiomes) Raw sequence reads

Project description:metagenomes (microbiomes) Raw sequence reads Raw sequence reads

| PRJNA1001607 | ENA

estuary inshore and oceanic

Project description:estuary inshore and oceanic Raw sequence reads

| PRJNA1068748 | ENA

Transcriptomic profiling of Cu-regulated genes in an oceanic diatom

Project description:Copper (Cu) plays an essential role in cellular metabolism and limits phytoplankton growth and production in parts of the open sea. Whole transcriptome analysis provides a powerful tool to explore gene expression profiles and cellular metabolic pathways regulated by Cu. In this study, we identified Cu-regulated genes by profiling the transcriptomes of an oceanic diatom, Thalassiosira oceanica 1005, adapted to survive in a Cu-limited and Cu-replete environment. The results provide insights to the mechanisms of adaptation and acclimation of T. oceanica to low Cu environments.

2020-02-29 | GSE145010 | GEO

The microbiomes and metagenomes of forest biochars.

Project description:Biochar particles have been hypothesized to provide unique microhabitats for a portion of the soil microbial community, but few studies have systematically compared biochar communities to bulk soil communities. Here, we used a combination of sequencing techniques to assess the taxonomic and functional characteristics of microbial communities in four-year-old biochar particles and in adjacent soils across three forest environments. Though effects varied between sites, the microbial community living in and around the biochar particles had significantly lower prokaryotic diversity and higher eukaryotic diversity than the surrounding soil. In particular, the biochar bacterial community had proportionally lower abundance of Acidobacteria, Planctomycetes, and ?-Proteobacteria taxa, compared to the soil, while the eukaryotic biochar community had an 11% higher contribution of protists belonging to the Aveolata superphylum. Additionally, we were unable to detect a consistent biochar effect on the genetic functional potential of these microbial communities for the subset of the genetic data for which we were able to assign functions through MG-RAST. Overall, these results show that while biochar particles did select for a unique subset of the biota found in adjacent soils, effects on the microbial genetic functional potential appeared to be specific to contrasting forest soil environments.

| S-EPMC4876420 | biostudies-literature

OmicsDI is part of the ELIXIR infrastructure

OmicsDI is an Elixir interoperability service. Learn more ›

Tweets

OmicsDI Databases

PRIDE
PeptideAtlas
MassIVE
JPOST Repository
Physiome Model Repository

EGA
EVA
ENA
LINCS
PAXDB
Cell Collective

MetaboLights
Metabolomics Workbench
MetabolomeExpress
GNPS
BioModels
FAIRDOMHub

ArrayExpress
dbGaP
ExpressionAtlas
GEO
NODE

Information

Databases
Help
API
Contact us
Code on GitHub
Terms of use
Submit Data