Browse
Submit Data
Databases
API
Help

Dataset Information

0 Views

0 Connections

0 Citations

0 Reanalyses

0 Downloads

Omics score: 0

Influence of protocatechuic acid on gene expression in Blastobotrys raffinosifermentans LS3

ABSTRACT: Influence of protocatechuic acid on gene expression in Blastobotrys raffinosifermentans LS3

PROVIDER: PRJNA802210 | ENA |

REPOSITORIES: ENA

ACCESS DATA

Json Xml

Similar Datasets

Influence of gallic acid on gene expression in Blastobotrys raffinosifermentans LS3

Project description:Gene expression profiling of Blastobotrys raffinosifermentans LS3 cells based on 6.025 annotated chromosomal Blastobotrys raffinosifermentans LS3 sequences and 36 putative mitochondrial gene oligos was performed following exposure to gallic acid. Microarray data were successfully used to identify expression changes of main candidate genes involved in tannic acid degradation, protocatechuic acid degradation, β-oxidation, the glyoxylate cycle, the methyl citrate cycle and the catabolism of the branched-chain amino acids valine, leucine and isoleucine.

2022-02-03 | GSE195801 | GEO

Influence of protocatechuic acid on gene expression in Blastobotrys raffinosifermentans LS3

Project description:Gene expression profiling of Blastobotrys raffinosifermentans LS3 cells based on 6.025 annotated chromosomal Blastobotrys raffinosifermentans LS3 sequences and 36 putative mitochondrial gene oligos was performed following exposure to protocatechuic acid. Microarray data were successfully used to identify expression changes of main candidate genes involved in tannic acid degradation, protocatechuic acid degradation, β-oxidation, the glyoxylate cycle, the methyl citrate cycle and the catabolism of the branched-chain amino acids valine, leucine and isoleucine.

2022-02-03 | GSE195808 | GEO

Influence of gallic acid on gene expression in Blastobotrys raffinosifermentans LS3

Project description:Influence of gallic acid on gene expression in Blastobotrys raffinosifermentans LS3

| PRJNA802203 | ENA

Blastobotrys raffinosifermentans

Project description:Blastobotrys raffinosifermentans overview

| PRJNA803303 | ENA

Blastobotrys adeninivorans

Project description:Blastobotrys adeninivorans overview

| PRJNA642929 | ENA

Influence of nalidixic acid on gene expression of Escherichia coli

Project description:The intention of this study is to analyse the effect of antibiotics on the gene expression of Escherichia coli. Shaking-flask cultivations of Escherichia coli K12GFP-UTL2 were carried out with a medium containing nalidixic acid. Cultures with antibiotic-free medium, which were run in an identical way, served as reference. Samples were taken at different times during the cultivations, the RNA was isolated and hybridised on whole genome yeast microarrays. Keywords: Influence of toxins on gene expression in E. coli A timeserial experiment of the influence of nalidixic acid on the gene expression in Escherichia coli was performed. Effects of the growth curve were eliminated by bionformatic methods.

2010-05-25 | E-GEOD-8674 | biostudies-arrayexpress

Influence of nalidixic acid on gene expression of Escherichia coli

2008-07-20 | GSE8674 | GEO

Influence of 20E on mosquito gene expression

Project description:Influence of 20E on mosquito gene expression

| PRJNA477857 | ENA

Influence of ascorbic acid depletion on gene expression in liver and lipid metabolism

Project description:Ascorbic acid (AA) is a powerful antioxidant and play as a cofactor for various enzymes in vivo. In this study, we investigated the effect of AA depletion on gene expression in the liver and lipid metabolism by using SMP30/GNL knockout (KO) mice which are unable to biosynthesis AA. First, we performed microarray analysis. Briefly, SMP30/GNL KO mice were weaned and divided into two groups; AA-depleted and supplemented groups, which mice were free access to water containing 1.5 g/L AA. After 4 weeks, mRNA was isolated and purified from the liver. In this study, Affymetrix® GeneChip® was used for microarray analysis. Actually, AA-depletion altered many gene expressions related to lipid metabolism. Especially, Cytochrome P450 7a1 (Cyp7a1), a late-limiting enzyme of bile acid biosynthesis, gene expression was significantly up-regulated. We also confirmed Cyp7a1 protein levels by Western blotting. Next, we investigated the influence of AA depletion on lipid metabolism. We examined the lipid and bile acid levels in the liver, plasma, and gallbladder from SMP30/GNL KO mice. Amount of total bile acid (TBA), free fatty acid (FA), total cholesterol (TC), triglyceride (TG), and phospholipids (PL) were measured by colorimetric method. AA depletion reduced TBA levels in the liver and gallbladder. However, FA, TC, TG, and PL in the plasma and liver were not changed by AA depletion. Although Cyp7a1 gene expression and protein levels were increased by AA depletion, amount of bile acid were reduced. Conclusively, we have shown that AA depletion reduced bile acid biosynthesis and elevated Cyp7a1 gene expression and protein levels. Thus, AA is an essential for bile acid biosynthesis pathway.

2015-10-04 | GSE41365 | GEO

Blastobotrys species rDNA ITS-D1D2

Project description:Blastobotrys species rDNA ITS-D1D2

| PRJEB29673 | ENA