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Studies on a hydrocephalus-causing mutation on Trim71 [RNA-seq]

ABSTRACT: Studies on a hydrocephalus-causing mutation on Trim71 [RNA-seq]

PROVIDER: PRJNA802914 | ENA |

REPOSITORIES: ENA

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			Action	DRS
	SRR17867575_1.fastq.gz	Fastqsanger.gz
	SRR17867575_2.fastq.gz	Fastqsanger.gz
	SRR17867576_1.fastq.gz	Fastqsanger.gz
	SRR17867576_2.fastq.gz	Fastqsanger.gz
	SRR17867577_1.fastq.gz	Fastqsanger.gz

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Studies on a hydrocephalus-causing mutation on Trim71

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Studies on a hydrocephalus-causing mutation on Trim71 [RNA-seq]

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A Novel Silent Mutation in the L1CAM Gene causing Fetal Hydrocephalus

Project description:To explore the genetic cause of a Chinese woman with fetal hydrocephalus X-linked hydrocephalus (XLH), a genetic disorder, has an incidence of 1/30,000 male births. The great proportion of XLH is ascribed to loss of function mutations of L1 cell adhesion molecule gene (L1CAM), but silent mutations in L1CAM with pathogenic potential were rare, and were usually ignored especially in WES detection. In the present study, we describe a novel silent L1CAM mutation in a Chinese pregnant woman reporting continuous five times pregnancies with fetal hydrocephalus. After fetal blood sampling, we found c.453G>T (p.Gly151=) in L1CAM gene of the fetus by whole exome sequencing (WES), RT-PCR of the mRNA from cord blood mononuclear cells and subsequent sequence analysis identified the mutation created a potential 5' splice site consensus sequence, which would result in an in-frame deletion of 72 bp from exon 5 and 24 amino acids of the L1CAM protein. Heterozygous mutations were confirmed in analyzing DNA and mRNA from peripheral blood mononuclear cells of the woman, and, a severe L1 syndrome was confirmed by fetal ultrasound scan and MRI. Our study first indicated c.453G>T (p.Gly151=) in L1CAM could be disease causing for hydrocephalus, which would aid in genetic counseling for the prenatal diagnosis of hydrocephalus. Meanwhile, it suggested some silent mutations detected in WES should not be ignored, splicing predictions of these mutations were necessary.

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A Novel Silent Mutation in the L1CAM Gene causing Fetal Hydrocephalus

Project description:A Novel Silent Mutation in the L1CAM Gene causing Fetal Hydrocephalus

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Studies on Trim71 in mouse embryonic stem cells

Project description:We studies on Trim71 regulates mouse embryonic stem cells by identifying the transcriptome-wide RNA targets of Trim71. Moreover, through inhibiting specific Trim71:mRNA interactions, we determined how Trim71 modulate miRNA activity in mouse embryonis cell cells

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mRNA sequencing of Trim71 conditional ("WT") and Trim71 KO mES cells

Project description:We report that Trim71 mutation does not lead to significant changes within the core regulatory network of mES cells, however, there is an upregulation of specific genes involved in neural differentiation. We thus conclude that Trim71 KO mES cells are poised for differentiation.

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