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ATAC-seq deconvolution with CiberATAC identifies a prognostic regulon of HMG20B in metastatic colorectal adenocarcinoma

ABSTRACT: ATAC-seq deconvolution with CiberATAC identifies a prognostic regulon of HMG20B in metastatic colorectal adenocarcinoma

PROVIDER: PRJNA805238 | ENA |

REPOSITORIES: ENA

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			Action	DRS
	SRR18000324_1.fastq.gz	Fastqsanger.gz
	SRR18000324_2.fastq.gz	Fastqsanger.gz
	SRR18000325_1.fastq.gz	Fastqsanger.gz
	SRR18000325_2.fastq.gz	Fastqsanger.gz
	SRR18000326_1.fastq.gz	Fastqsanger.gz

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ATAC-seq deconvolution with CiberATAC identifies a prognostic regulon of HMG20B in metastatic colorectal adenocarcinoma

Project description:We used a sequential metastasis model of colorectal cancer cell lines and tumours to understand epigenomic regulators of metastasis. We performed scRNA-seq, scATAC-seq, and bulk ATAC-seq on these samples and discovered the deregulation of HMG20B and its regulon.

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