Browse
Submit Data
Databases
API
Help

Dataset Information

0 Views

0 Connections

0 Citations

0 Reanalyses

0 Downloads

Omics score: 0

Astyanax mexicanus isolate:ESR-SI-001

ABSTRACT: Astyanax mexicanus Surface Genome sequencing

PROVIDER: PRJNA807270 | ENA |

REPOSITORIES: ENA

ACCESS DATA

Json Xml

Dataset's files

Source:

			Action	DRS
		Other
		Other
	SRR18052671_1.fastq.gz	Fastqsanger.gz
	SRR18052671_2.fastq.gz	Fastqsanger.gz
	SRR18052672_subreads.fastq.gz	Fastqsanger.gz

Items per page:

1 - 5 of 5

Similar Datasets

Astyanax mexicanus

Project description:Astyanax mexicanus Genome sequencing

| PRJNA253046 | ENA

Astyanax mexicanus isolate:ESR-SI-002

Project description:Astyanax mexicanus isolate:ESR-SI-002 Genome sequencing and assembly

| PRJNA819399 | ENA

Astyanax mexicanus isolate:ESR-SI-003

Project description:Astyanax mexicanus isolate:ESR-SI-003 Genome sequencing and assembly

| PRJNA819394 | ENA

Astyanax mexicanus

Project description:Astyanax mexicanus overview

| PRJNA89367 | ENA

Astyanax mexicanus

Project description:Astyanax mexicanus RAD-tag sequencing

| PRJNA186562 | ENA

Astyanax mexicanus

Project description:Astyanax mexicanus Eye Transcriptome

| PRJNA938923 | ENA

RNA-Seq Analysis of liver cells of Astyanax mexicanus.

Project description:Organisms adapt to and survive in environments with varying nutrient availability. Cis-regulatory changes play important roles in adaptation and phenotypic evolution. To what extent cis-regulatory elements contribute to metabolic adaptation is less understood. Here we have utilized a unique vertebrate model, Astyanax mexicanus, that survives in nutrient rich surface and nutrient deprived cave water to uncover gene regulatory networks in metabolic adaptation. We performed genome-wide analysis of accessible chromatin and histone modifications in the liver tissue of one surface and two independently derived cave populations, providing the first genome-wide epigenetic landscape in this organism. In parallel, we performed RNA Seq as a read out of gene expression. We find that many cis-regulatory elements differ between surface and the cavefish, while the two independently derived cave populations have evolved remarkably similar regulatory signatures. Changes in gene regulatory networks between the surface and cave morphotypes point to global changes in key metabolic pathways.

2021-09-07 | GSE153050 | GEO

Astyanax mexicanus

Project description:Pachon cavefish Astyanax mexicanus genome sequencing and assembly

| PRJNA734455 | ENA

Astyanax mexicanus

Project description:Astyanax mexicanus - Developmental Gene Expression

| PRJNA258661 | ENA

Astyanax mexicanus

Project description:Astyanax mexicanus Transcriptome or Gene expression

| PRJNA285201 | ENA