Browse
Submit Data
Databases
API
Help

Dataset Information

0 Views

0 Connections

0 Citations

0 Reanalyses

0 Downloads

Omics score: 0

Pimephales promelas isolate:Not applicable

ABSTRACT: Pimephales promelas isolate:Not applicable Raw sequence reads

PROVIDER: PRJNA807296 | ENA |

REPOSITORIES: ENA

ACCESS DATA

Json Xml

Dataset's files

Source:

			Action	DRS
	SRR18576525_1.fastq.gz	Fastqsanger.gz
	SRR18576525_2.fastq.gz	Fastqsanger.gz
	SRR18560773_1.fastq.gz	Fastqsanger.gz
	SRR18560773_2.fastq.gz	Fastqsanger.gz
	SRR18560774_1.fastq.gz	Fastqsanger.gz

Items per page:

1 - 5 of 48

Similar Datasets

Pimephales promelas

Project description:Pimephales promelas Raw sequence reads

| PRJNA806159 | ENA

Pimephales promelas

Project description:Pimephales promelas Raw sequence reads

| PRJNA1007866 | ENA

Pimephales promelas

Project description:Pimephales promelas overview

| PRJNA108769 | ENA

Pimephales promelas

Project description:Pimephales promelas FHM Transcriptome

| PRJNA951474 | ENA

Pimephales promelas

Project description:Pimephales promelas Transcriptome or Gene expression

| PRJNA248047 | ENA

Pimephales promelas

Project description:Pimephales promelas Transcriptome or Gene expression

| PRJNA247929 | ENA

Pimephales promelas

Project description:Pimephales promelas Genome sequencing and assembly

| PRJNA227290 | ENA

Pimephales promelas strain:Rosy Red

Project description:Pimephales promelas Transcriptome

| PRJNA260923 | ENA

Tissue-based mapping of the fathead minnow (Pimephales promelas) transcriptome and proteome

Project description:Omics approaches are broadly used to explore endocrine and toxicity-related pathways and functions. Nevertheless, there is still a significant gap in knowledge in terms of understanding the endocrine system and its numerous connections and intricate feedback loops, especially in non-model organisms. The fathead minnow (Pimephales promelas) is a widely used small fish model for aquatic toxicology and regulatory testing, particularly in North America. A draft genome has been published but the amount of available genomic or transcriptomic information is still far behind that of other more broadly studied species, such as the zebrafish. Here, we surveyed the tissue-specific proteome and transcriptome profiles in adult male fathead minnow. To do so, we generated a draft transcriptome using short and long sequencing reads. We also performed RNA sequencing and proteomics analysis on the telencephalon, hypothalamus, liver, and gut of male fish. The main purpose of this analysis was to generate tissue-specific omics data in order to support future aquatic ecotoxicogenomic and endocrine-related studies as well as to improve our understanding of the fathead minnow as an ecological model.

2018-10-15 | PXD010216 | Pride

Pimephales promelas isolate:UF

Project description:Tissue-based mapping of the fathead minnow (Pimephales promelas) transcriptome and proteome

| PRJNA479767 | ENA