Browse
Submit Data
Databases
API
Help

Dataset Information

0 Views

0 Connections

0 Citations

0 Reanalyses

0 Downloads

Omics score: 0

Single cell transcriptomic and spatial landscapes of the developing human pancreas - spatial transcriptomics

ABSTRACT: Single cell transcriptomic and spatial landscapes of the developing human pancreas - spatial transcriptomics

PROVIDER: PRJNA809732 | ENA |

REPOSITORIES: ENA

ACCESS DATA

Json Xml

Dataset's files

Source:

			Action	DRS
	SRR18116777_1.fastq.gz	Fastqsanger.gz
	SRR18116777_2.fastq.gz	Fastqsanger.gz
	SRR18116778_1.fastq.gz	Fastqsanger.gz
	SRR18116778_2.fastq.gz	Fastqsanger.gz
	SRR18116779_1.fastq.gz	Fastqsanger.gz

Items per page:

1 - 5 of 16

Similar Datasets

Single cell transcriptomic and spatial landscapes of the developing human pancreas - spatial transcriptomics

Project description:The progress made in directed differentiation of stem cells has shown that understanding human pancreas development can provide cues for generating unlimited amounts of insulin-producing beta cells for transplantation therapy in diabetes. However, current differentiation protocols have not been successful in reproducibly generating functional human beta cells in vitro, partly due to incomplete understanding of human pancreas development. Here, we present detailed transcriptomic analysis of the various cell types of the developing human pancreas, including their spatial gene patterns. We integrated single cell RNA sequencing with spatial transcriptomics at multiple developmental timepoints and revealed distinct temporal-spatial gene cascades in the developing human pancreas.

2022-12-21 | GSE197317 | GEO

Single cell transcriptomic and spatial landscapes of the developing human pancreas

2022-12-21 | GSE197064 | GEO

Single cell transcriptomic and spatial landscapes of the developing human pancreas

Project description:Single cell transcriptomic and spatial landscapes of the developing human pancreas

| PRJNA808751 | ENA

Spatial transcriptomics profiling of the developing mouse embryo

Project description:Spatial transcriptomics profiling of the developing mouse embryo

| PRJNA888045 | ENA

Single-Cell and Spatial Transcriptomics Analysis of Human Adrenal Aging (spatial transcriptomics)

Project description:These data were used in the spatial transcriptomics analysis of the article titled \\"Single-Cell and Spatial Transcriptomics Analysis of Human Adrenal Aging\\".

2024-04-22 | E-MTAB-13991 | biostudies-arrayexpress

Visium Spatial Transcriptomics expression profiles from IPMN samples of the pancreas

Project description:Visium Spatial Transcriptomics expression profiles from IPMN samples of the pancreas

| PRJNA975814 | ENA

Spatial landscapes of the fed, fasted and refed livers from C57BL/6J mice - spatial transcriptomics

Project description:Spatial landscapes of the fed, fasted and refed livers from C57BL/6J mice - spatial transcriptomics

| PRJNA923378 | ENA

Type 2 Diabetes Specific Spatial Differential Gene Expression in Pancreas Visium Data

Project description:Understanding the spatial distribution of gene expression in the pancreas could provide new insights into its function and islet biology. Visium spatial gene expression is a powerful tool for quantifying gene expression of cells within their spatial context. We describe the generation and analysis of spatial transcriptomics data from six pancreas samples from healthy donors. Our analysis revealed high expression of INS within islets. However, we also identified a bleed of highly abundant islet genes (e.g., INS, GCG) into surrounding tissue areas. Through computational analyses, we successfully corrected for this bleed. We then identify genes which are spatially differentially expressed in the Type 2 Diabetes samples. We provide these data for researchers to study the organization of the pancreas and islets.

2024-08-31 | GSE264331 | GEO

Spatial transcriptomics of the axolotl forebrain

Project description:To investigate spatial heterogeneities in the axolotl forebrain, a coronal section of it was obtained for spatial transcriptomics using Visium V1.

2022-07-20 | E-MTAB-11665 | biostudies-arrayexpress

Spatial transcriptomics of bat gut sections

Project description:Single-cell analysis on spatial transcriptomics from bat gut

2024-11-19 | E-MTAB-13279 | biostudies-arrayexpress