Browse
Submit Data
Databases
API
Help

Dataset Information

0 Views

0 Connections

0 Citations

0 Reanalyses

0 Downloads

Omics score: 0

Nematoda

ABSTRACT: Raw sequence data for NemaSPEAR[%] validation

PROVIDER: PRJNA813739 | ENA |

REPOSITORIES: ENA

ACCESS DATA

Json Xml

Dataset's files

Source:

			Action	DRS
	SRR18292039_1.fastq.gz	Fastqsanger.gz
	SRR18292039_2.fastq.gz	Fastqsanger.gz
	SRR18292040_1.fastq.gz	Fastqsanger.gz
	SRR18292040_2.fastq.gz	Fastqsanger.gz
	SRR18292041_1.fastq.gz	Fastqsanger.gz

Items per page:

1 - 5 of 78

Similar Datasets

Nematoda

Project description:Nematoda Raw sequence reads fro NemaSPEAR validation via metabarcoding

| PRJNA608630 | ENA

Array-based cross-species hybridization between genera of Rhabditidae (Nematoda)

Project description:The objective of this work was to determine the effectiveness of cross-hybridization of gDNA from five native soil nematodes to an Affymetrix Caenorhabditis elegans tiling array. Cross-hybridization experiments using C. briggsae, for which genome information is available, allowed hybridisation intensities to be correlated with known sequence differences. Initial analysis of data by conventional array-based Comparative Genomic Hybridization (aCGH) techniques at the chip level lead to misleading results due to an artefact from the combination of scaling, bandwidth smoothing, and differential GC content in exon and intron regions. To circumvent this artefact, individual probes were instead normalized and centered by adjusting for probe-specific thermodynamic binding affinity. However, cross-hybridization of C. briggsae DNA revealed that the resultant probe intensities alone were still uncorrelated to sequence similarity below 90% identity. Below 90% similarity, all probes hybridize uniformly poorly, and above 90% similarity the hybridization differences are not large enough to detect over background, therefore, no 'threshold' ratio of hybridization intensity was successful at identifying probes with similarity to the heterologous genome. In light of the observations described here, we suggest that the criteria for replication and verification of gene expression profiles generated from cross-species microarray hybridizations be more stringent than typically adopted for con-specific hybridizations.

2010-08-18 | GSE23667 | GEO

Meiofauna (Nematoda)

Project description:HTS meiofauna extract from CCFZ sediments (GSR area) - Raw sequence reads

| PRJNA722112 | ENA

Nematoda sp. HFX-2016

Project description:Nematoda sp. HFX-2016 Raw sequence reads

| PRJNA320796 | ENA

Nematoda sp. HFX-2016

Project description:Nematoda sp. HFX-2016 Raw sequence reads

| PRJNA320672 | ENA

Array-based cross-species hybridization between genera of Rhabditidae (Nematoda)

2010-08-17 | E-GEOD-23667 | biostudies-arrayexpress

SRiD- A facile DNA barcode generation and management system for high throughput screening

Project description:20 random DNA barcodes were designed in silico and transfected into PC3 cells. Barcodes were sequenced using Illumina-Miseq technology to find the sequence and their respective copy numbers. Current file contains the raw data of these DNA barcodes in fastq format Validating an algorithm called SRiD that generates random DNA barcodes that do not match a genome of interest, in this case human genome. 20 DNA barcodes were used for this validation.

2016-03-31 | E-GEOD-67441 | biostudies-arrayexpress

Prospective Collection of PillCam SB3 Videos and Raw Data Files for Future Developments (SODA)

Project description:Observational, Multicenter, Post-market, Minimal risk, Prospective data collection of PillCam SB3 videos (including PillCam reports) and raw data files and optional collection of Eneteroscopy reports

| 2291850 | ecrin-mdr-crc

Independent validation piglet raw sequence submit

Project description:Independent validation piglet raw sequence submit Raw sequence reads

| PRJNA730972 | ENA

Nematoda

Project description:Nematoda

| PRJNA63393 | ENA