Browse
Submit Data
Databases
API
Help

Dataset Information

0 Views

0 Connections

0 Citations

0 Reanalyses

0 Downloads

Omics score: 0

RNA-seq analsis of control or two P-cadherin knockout HCA-7 cell lines

ABSTRACT: RNA-seq analsis of control or two P-cadherin knockout HCA-7 cell lines

PROVIDER: PRJNA821844 | ENA |

REPOSITORIES: ENA

ACCESS DATA

Json Xml

Dataset's files

Source:

			Action	DRS
	SRR18559412_1.fastq.gz	Fastqsanger.gz
	SRR18559412_2.fastq.gz	Fastqsanger.gz
	SRR18559413_1.fastq.gz	Fastqsanger.gz
	SRR18559413_2.fastq.gz	Fastqsanger.gz
	SRR18559414_1.fastq.gz	Fastqsanger.gz

Items per page:

1 - 5 of 48

Similar Datasets

RNA-seq analsis of control or two P-cadherin knockout HCA-7 cell lines

Project description:The goal of this experiment was to determine the effect of P-cadherin knockout on transcriptional profile of cells

2022-04-03 | GSE199859 | GEO

RNA-seq analsis of control or knockout RN7SK in A549 cell line

Project description:RNA-seq analsis of control or knockout RN7SK in A549 cell line

| PRJNA823916 | ENA

RNA-seq analsis of siRNA knockdown of cadherin-11 (CDH11) gene in human intestinal myofibroblasts (HIMFs)

Project description:RNA-seq analsis of siRNA knockdown of cadherin-11 (CDH11) gene in human intestinal myofibroblasts (HIMFs)

| PRJNA950458 | ENA

Expression data from three endothelial cell lines derived from murine embryonic stem cells expressing VE-cadherin, N-cadherin or both

2012-01-10 | GSE34948 | GEO

RNA-seq analsis of siRNA knockdown of cadherin-11 (CDH11) gene in human intestinal myofibroblasts (HIMFs)

Project description:The goal of this experiment was to determine the effect of cadherin-11 (CDH11) knockdown on transcriptional profile of HIMFs

2024-03-01 | GSE228619 | GEO

Expression data from three endothelial cell lines derived from murine embryonic stem cells expressing VE-cadherin, N-cadherin or both

Project description:Endothelial cells (ECs) express two members of the cadherin family, VE- and N-cadherin. While VE-cadherin induces EC homotypic adhesion, N-cadherin function in ECs remains largely unknown. EC-specific inactivation of either VE- or N-cadherin leads to early foetal lethality suggesting that these cadherins play a non-redundant role in vascular development. Goal of this study was to further investigate this hypothesis analyzing both additive and divergent functions of the two cadherins in ECs. The three endothelial cell lines were cultured. Total RNA was extracted using commercial homogenization (QIAshredder) and purification (RNeasy Mini Kit) reagents (Qiagen). Quality control (QC) of the RNA samples was performed using an Agilent Bioanalyzer 2100 (Agilent Technologies). Two different RNA extractions were processed for each of the cell lines under analysis, and each sample was labelled and hybridized to a Mouse Gene 1.0 ST Genechip array according to the manufacturer’s specifications (Affymetrix Inc). Data were analysed using Partek Genomics Suite v6.3 software (RMA algorithm). Differentially expressed genes were identified through ANOVA, using a fold change cutoff >2 and a p-value of 0.05.

2012-01-10 | E-GEOD-34948 | biostudies-arrayexpress

RNA-seq analsis of control or knockout RN7SK in A549 cell line

Project description:The goal of this experiment was to determine the effect of RN7SK knockout in A549 cell line.

2022-10-31 | GSE200273 | GEO

Transcription profiling by array of mouse wild type and E-cadherin knockout embryonic stem cells grown with or without cytokine leukemia inhibitory factor

Project description:We previously observed that E-cadherin knockout embryonic stem cells do not differentiate in the absence of the cytokine leukemia inhibitory factor (LIF) (Soncin et al., 2009, Stem Cells 27 p2069-2080). This experiment was designed to compare the transcription profile of E-cadherin KO ES cells cultured in the presence and absence of LIF. We also compared E-cadherin KO ES cells with wild type D3 ES cells grown in the presence of LIF.

2011-06-19 | E-MEXP-2836 | biostudies-arrayexpress

RNA seq on two primary pancreatic cancer cell lines (cancer-collagen1 knockout cell line and control pancreatic cancer cell line)

Project description:RNA sequencing analysis on two primary pancreatic cancer cell lines from transgenic mice: (1) cancer-collagen1 knockout cell line from KPPC;Col1pdxKO cancer-collagen1 knockout tumor and (2) control pancreatic cancer cell line from KPPC tumor

2022-05-12 | GSE131064 | GEO

Gene expression in the mouse embryonic small intestine in the presence or absence of E-cadherin

Project description:Gene expression was compared between E18.5 E-cadherin conditional knockout (cKO) small intestine and E18.5 control mouse small intestine. E18.5 mouse small intestine was collected from control and E-cadherin conditional knockout mice. RNA was prepared. Affymetrix Mouse Gene 1.0 gene arrays were used to interrogate gene expression. Data was analyzed using dChip software.

2012-02-28 | E-GEOD-31771 | biostudies-arrayexpress

OmicsDI is part of the ELIXIR infrastructure

OmicsDI is an Elixir interoperability service. Learn more ›

Tweets

OmicsDI Databases

PRIDE
PeptideAtlas
MassIVE
JPOST Repository
Physiome Model Repository

EGA
EVA
ENA
LINCS
PAXDB
Cell Collective

MetaboLights
Metabolomics Workbench
MetabolomeExpress
GNPS
BioModels
FAIRDOMHub

ArrayExpress
dbGaP
ExpressionAtlas
GEO
NODE

Information

Databases
Help
API
Contact us
Code on GitHub
Terms of use
Submit Data