Browse
Submit Data
Databases
API
Help

Dataset Information

0 Views

0 Connections

0 Citations

0 Reanalyses

0 Downloads

Omics score: 0

RNA-seq data in MEF and mESC sequenced by HiSeq 3000

ABSTRACT: RNA-seq data in MEF and mESC sequenced by HiSeq 3000

PROVIDER: PRJNA832256 | ENA |

REPOSITORIES: ENA

ACCESS DATA

Json Xml

Dataset's files

Source:

			Action	DRS
	SRR18923603.fastq.gz	Fastqsanger.gz
	SRR18923603_1.fastq.gz	Fastqsanger.gz
	SRR18923603_2.fastq.gz	Fastqsanger.gz
	SRR18923604.fastq.gz	Fastqsanger.gz
	SRR18923604_1.fastq.gz	Fastqsanger.gz

Items per page:

1 - 5 of 21

Similar Datasets

RNA-seq data in MEF and mESC sequenced by HiSeq 3000

Project description:We benchmark Illumina’s HiseqX10 instrument against Beijing Genomics Institute’s (BGI) DNBSEQ-G400 platform, a considerably cheaper sequencing alternative. For comparisons, the same bulk ATAC-seq libraries generated from pluripotent stem cells (PSCs) and fibroblasts were sequenced on both platforms. Both instruments generate sequencing reads with comparable mapping rates and genomic context. However DNBSEQ-G400 data contained a significantly higher number of small, sub-nucleosomal reads (>30% increase) and a reduced number of bi-nucleosomal reads (>75% decrease), which resulted in narrower peak-bases and improved peak calling, enabling the identification of 4% more differentially accessible regions between PSCs and fibroblasts. Ability to identify master TFs that underpin the PSC state relative to fibroblasts, including aggregate and de novo foot-printing capacity, were highly similar between data generated on both platforms.

2022-07-27 | GSE201576 | GEO

RNA-seq and ATAC-seq in MEF and mESC sequenced on different instrument models

Project description:RNA-seq and ATAC-seq in MEF and mESC sequenced on different instrument models

| PRJNA832247 | ENA

ATAC-seq data in MEF and mESC sequenced by BGI DNBSEQ-G400 platform and Illumina HiseqX10 instruments

Project description:ATAC-seq data in MEF and mESC sequenced by BGI DNBSEQ-G400 platform and Illumina HiseqX10 instruments

| PRJNA832255 | ENA

Global proteome comparison between MEF cells and mESC-R1 cells

Project description:The aim of this project is to use an integrated approach involving label-free strategy, HPLC fractionation and LC-MS/MS to quantify the dynamic changes of the whole proteome of Mouse Cell(MEF and R1 cells).

2023-03-10 | PXD034181 | Pride

CTCF binding profiles in MEF cells

Project description:We sequenced CTCF binding sites in Akt1+/+ or Akt1-/- mouse embryonic fibroblast (MEF) cell line.

2016-06-03 | GSE69798 | GEO

ATAC-seq data in MEF and mESC sequenced by BGI DNBSEQ-G400 platform and Illumina HiseqX10 instruments

2022-07-27 | GSE201577 | GEO

RNA-seq and ATAC-seq in MEF and mESC sequenced on different instrument models

Project description:This SuperSeries is composed of the SubSeries listed below.

2022-07-27 | GSE201578 | GEO

Phytophthora pluvialis isolate:NZFS 3000

Project description:Phytophthora pluvialis isolate:NZFS 3000 Genome sequencing and assembly

| PRJNA290685 | ENA