Browse
Submit Data
Databases
API
Help

Dataset Information

0 Views

0 Connections

0 Citations

0 Reanalyses

0 Downloads

Omics score: 0

Ipomoea batatas cultivar:Beauregard

ABSTRACT: Sweetpotato heat stress RNA-seq

PROVIDER: PRJNA834095 | ENA |

REPOSITORIES: ENA

ACCESS DATA

Json Xml

Dataset's files

Source:

			Action	DRS
	SRR19616269.fastq.gz	Fastqsanger.gz
	SRR19616270.fastq.gz	Fastqsanger.gz
	SRR19616271.fastq.gz	Fastqsanger.gz
	SRR19616272.fastq.gz	Fastqsanger.gz
	SRR19614673_1.fastq.gz	Fastqsanger.gz

Items per page:

1 - 5 of 16

Similar Datasets

Ipomoea batatas cultivar:Beauregard

Project description:Sweetpotato 'Beauregard' annotation RNA-Seq

| PRJNA982162 | ENA

Ipomoea batatas

Project description:Sweetpotato salt stress RNA-seq

| PRJNA834099 | ENA

Ipomoea batatas

Project description:Sweetpotato PEG stress RNA-seq

| PRJNA475293 | ENA

High throughput sequencing identifies chilling responsive genes in sweetpotato (Ipomoea batatas Lam.) during storage

Project description:Sweetpotato (Ipomoea batatas L.) is a globally important economic food crop. It belongs to Convolvulaceae family and origins in the tropics; however, sweetpotato is sensitive to cold stress during storage. In this study, we performed transcriptome sequencing to investigate the sweetpotato response to chilling stress during storage. A total of 110,110 unigenes were generated via high-throughput sequencing. Differentially expressed genes (DEGs) analysis showed that 18,681 genes were up-regulated and 21,983 genes were down-regulated in low temperature condition. Many DEGs were related to the cell membrane system, antioxidant enzymes, carbohydrate metabolism, and hormone metabolism, which are potentially associated with sweetpotato resistance to low temperature. The existence of DEGs suggests a molecular basis for the biochemical and physiological consequences of sweetpotato in low temperature storage conditions. Our analysis will provide a new target for enhancement of sweetpotato cold stress tolerance in postharvest storage through genetic manipulation.

2024-02-06 | GSE255226 | GEO

Ipomoea batatas cultivar:Beauregard

Project description:Ipomoea batatas Beauregard root RNA-Seq

| PRJNA491292 | ENA

Ipomoea batatas

Project description:RNA-seq for yellow flesh in sweetpotato

| PRJDB10052 | ENA

Temporal patterns of gene expression associated with tuberous root formation and development in sweetpotato (Ipomoea batatas)

Project description:Investigation of whole transcriptome gene expression level during tuberous root formation and development in sweetpotato (Ipomoea batatas) cv. Guangshu 87 Identification of transcription factors (TFs) during tuberous root formation and development in sweetpotato (Ipomoea batatas) cv. Guangshu 87 A total of 7 samples were analyzed using RNA isolated from sweetpotato roots at 10, 15, 20, 30, 60, 90, 120days after transplanting. Each sample had two biological replicates.

2015-07-12 | E-GEOD-48834 | biostudies-arrayexpress

Comparative transcriptomic and proteomic analysis reveals common molecular factors responsive to heat and drought stress in sweetpotato (Ipomoea batatas)

Project description:In the process of field production, crops are often affected by a variety of abiotic stresses, among which heat (HT) and drought (DR) stress are the most common co-stresses in summer. Although a large number of studies have been carried out on HT and DR stress respectively, little is known about how their combination (DH) affects plants. In this study, we investigated the responses of sweetpotato to HT, DR or DH stress by RNA-seq and DIA technologies, and set up a controlled experiment and quantified gene expression and protein concentrations from paired samples. A total of 12 cDNA libraries were constructed under HT, DR, DH and control condition. We identified 536, 389 and 907 DEGs in response to HT, DR or DH stress, of which 147 were shared and 447 were specifically identified under DH stress. Proteomic analysis identified 1609, 1168 and 1535 DEPs under HT, DR and DH treatments compared to the control, of which 656 were shared and 358 were exclusively identified under DH stress. Further analysis revealed that some DEGs/DEPs associated with heat shock protein, carbon metabolism, phenylalanine metabolism, starch and cellulose metabolism, plant defense and so on. Correlation analysis identified a number of co-expressed genes and proteins under HT, DR or DH stress. Meanwhile, a cross-comparison of transcriptomics and proteomics data identified 59, 35 and 86 significant co DEGs and DEPs genes under HT, DR and DH stress respectively. This is the first time that studies the differential genes and proteins of sweet potato under DH stress, and hopes that the results of this study will help us to understand the molecular mechanism of sweet potato resistance to heat and drought stress.

2022-10-23 | GSE216152 | GEO

Temporal patterns of gene expression associated with tuberous root formation and development in sweetpotato (Ipomoea batatas)

2015-07-12 | GSE48834 | GEO

Ipomoea batatas cultivar:Beauregard

Project description:Ipomoea batatas cultivar:Beauregard Genome sequencing and assembly

| PRJNA701155 | ENA