Browse
Submit Data
Databases
API
Help

Dataset Information

0 Views

0 Connections

0 Citations

0 Reanalyses

0 Downloads

Omics score: 0

Ipomoea batatas

ABSTRACT: Sweetpotato salt stress RNA-seq

PROVIDER: PRJNA834099 | ENA |

REPOSITORIES: ENA

ACCESS DATA

Json Xml

Dataset's files

Source:

			Action	DRS
	SRR19614675_1.fastq.gz	Fastqsanger.gz
	SRR19614675_2.fastq.gz	Fastqsanger.gz
	SRR19614676_1.fastq.gz	Fastqsanger.gz
	SRR19614676_2.fastq.gz	Fastqsanger.gz
	SRR19614677.fastq.gz	Fastqsanger.gz

Items per page:

1 - 5 of 10

Similar Datasets

Ipomoea batatas

Project description:Sweetpotato PEG stress RNA-seq

| PRJNA475293 | ENA

Ipomoea batatas cultivar:Beauregard

Project description:Sweetpotato heat stress RNA-seq

| PRJNA834095 | ENA

High throughput sequencing identifies chilling responsive genes in sweetpotato (Ipomoea batatas Lam.) during storage

Project description:Sweetpotato (Ipomoea batatas L.) is a globally important economic food crop. It belongs to Convolvulaceae family and origins in the tropics; however, sweetpotato is sensitive to cold stress during storage. In this study, we performed transcriptome sequencing to investigate the sweetpotato response to chilling stress during storage. A total of 110,110 unigenes were generated via high-throughput sequencing. Differentially expressed genes (DEGs) analysis showed that 18,681 genes were up-regulated and 21,983 genes were down-regulated in low temperature condition. Many DEGs were related to the cell membrane system, antioxidant enzymes, carbohydrate metabolism, and hormone metabolism, which are potentially associated with sweetpotato resistance to low temperature. The existence of DEGs suggests a molecular basis for the biochemical and physiological consequences of sweetpotato in low temperature storage conditions. Our analysis will provide a new target for enhancement of sweetpotato cold stress tolerance in postharvest storage through genetic manipulation.

2024-02-06 | GSE255226 | GEO

Ipomoea batatas

Project description:RNA-seq for yellow flesh in sweetpotato

| PRJDB10052 | ENA

Temporal patterns of gene expression associated with tuberous root formation and development in sweetpotato (Ipomoea batatas)

Project description:Investigation of whole transcriptome gene expression level during tuberous root formation and development in sweetpotato (Ipomoea batatas) cv. Guangshu 87 Identification of transcription factors (TFs) during tuberous root formation and development in sweetpotato (Ipomoea batatas) cv. Guangshu 87 A total of 7 samples were analyzed using RNA isolated from sweetpotato roots at 10, 15, 20, 30, 60, 90, 120days after transplanting. Each sample had two biological replicates.

2015-07-12 | E-GEOD-48834 | biostudies-arrayexpress

Ipomoea batatas cultivar:Beauregard

Project description:Sweetpotato 'Beauregard' annotation RNA-Seq

| PRJNA982162 | ENA

Temporal patterns of gene expression associated with tuberous root formation and development in sweetpotato (Ipomoea batatas)

2015-07-12 | GSE48834 | GEO

Assessing the remarkable morphological diversity and transcriptomic basis of leaf shape in Ipomoea batatas (sweetpotato)

Project description:Leaf shape is a spectacularly diverse trait that influences various aspects of plant physiology, and is even correlated with crop yield and quality in multiple species. However, only a few genetic dissections of leaf shape have been accomplished at a species-wide level. Here, we perform an initial characterization of leaf shape variation in Ipomoea batatas, the sweetpotato, at multiple scales of analysis. We use a transcriptomic survey to identify gene expression changes associated with two commonly studied leaf shape traits--circularity and aspect ratio using 19 individuals (accession) of sweetpotato. We comprehensively describe the remarkable morphological diversity in leaf shape in sweetpotato, and identify 147 differentially regulated genes associated with circularity and aspect ratio, providing an initial set of hypotheses regarding the genetic basis of leaf shape in this species.

2019-08-31 | GSE128065 | GEO

Ipomoea batatas

Project description:lncRNA and mRNA Dynamics in Sweetpotato: Adaptive Responses to Abiotic Stress in Martian Soil

| PRJNA1142541 | ENA

Ipomoea batatas

Project description:Transcriptome of sweetpotato during curing

| PRJNA792934 | ENA